RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1068513", tax_kingdom = "Fungi" and tax_phylum = "Cryptomycota"

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tax_superkingdom 1

tax_phylum 1

  • Cryptomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1068513 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1456610 1456610 PRJNA1068513_S_NODE_7162_length_340_cov_62.056180_g7116_i0 PRJNA1068513 7162 340 62.05618 210.991012 Rozella allomycis CSF55 988480 Fungi Fungi 83.6 9.02e-17   NR EPZ34692.1 988480 g7116 i0 66.2 2.77058823529412 65 21 56.5 1 301 110 190 254 EPZ34692.1 Nucleic acid-binding domain-containing protein [Rozella allomycis CSF55] diamond 942 83.6 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis
27667696 27667696 PRJNA1068513_S_NODE_2364_length_540_cov_2.205567_g2321_i0 PRJNA1068513 2364 540 2.205567 11.9100618 Rozella allomycis CSF55 988480 Fungi Fungi 75.1 9.16e-13   NR EPZ33038.1 988480 g2321 i0 45.7 0.894444444444444 81 44 45 0 3 245 145 225 EPZ33038.1 Protein kinase, catalytic domain-containing protein [Rozella allomycis CSF55] diamond 483 75.1 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis
29909483 29909483 PRJNA1068513_S_NODE_10451_length_276_cov_1.753695_g10405_i0 PRJNA1068513 10451 276 1.753695 4.8401982 Rozella allomycis CSF55 988480 Fungi Fungi 73.9 4.59e-13   NR EPZ30849.1 988480 g10405 i0 42.9 0.760869565217391 70 40 76.1 0 263 54 299 368 EPZ30849.1 Acyl-CoA N-acyltransferase domain-containing protein [Rozella allomycis CSF55] diamond 210 73.9 1 Eukaryota Opisthokonta Fungi Cryptomycota       Rozella Rozella allomycis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;