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contig_metadata

13 rows where bioproject = "PRJNA1068513" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 13 ✖

bioproject 1

  • PRJNA1068513 · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1456583 1456583 PRJNA1068513_S_NODE_5222_length_397_cov_22.453704_g5177_i0 PRJNA1068513 5222 397 22.453704 89.14120488 Monoraphidium neglectum 145388 Plants Plants 54.7 0.011   NTclustered gi|926786903|ref|XM_014046472.1| 145388 g5177 i0 100 0.0730478589420655 29 0 7 0 4 32 479 451 Monoraphidium neglectum hypothetical protein mRNA blastn 29 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
15484610 15484610 PRJNA1068513_S_NODE_5873_length_376_cov_2.316832_g5827_i0 PRJNA1068513 5873 376 2.316832 8.71128832 Tetradesmus dimorphus 119574 Plants Plants 63.9 1.65e-5   NTclustered gi|2692951716|ref|NC_086754.1| 119574 g5827 i0 100 0.0904255319148936 34 0 9 0 27 60 71182 71215 Tetradesmus dimorphus strain FBCC-A0330 chloroplast, complete genome blastn 34 63.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus dimorphus
19307414 19307414 PRJNA1068513_S_NODE_12936_length_245_cov_5.023256_g12890_i0 PRJNA1068513 12936 245 5.023256 12.3069772 Auxenochlorella protothecoides 3075 Plants Plants 104 6.02e-18   NTclustered gi|760447288|ref|XM_011402411.1| 3075 g12890 i0 87.64 42.1918367346939 89 11 36 0 156 244 1652 1564 Auxenochlorella protothecoides Peptidylprolyl isomerase domain and WD repeat-containing protein 1 partial mRNA blastn 10337 104 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
27027213 27027213 PRJNA1068513_S_NODE_4042_length_445_cov_5.215054_g3997_i0 PRJNA1068513 4042 445 5.215054 23.2069903 Eukaryota 2759 Plants Plants 104 1.27e-25   NR KAI3429597.1 3077 g3997 i0 50.4 10.0516853932584 131 64 87.6 1 436 47 3 133 KAI3429597.1 hypothetical protein D9Q98_005683 [Chlorella vulgaris] diamond 4473 104 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
27659336 27659336 PRJNA1068513_S_NODE_8864_length_304_cov_1.151515_g8818_i0 PRJNA1068513 8864 304 1.151515 3.5006056 Eukaryota 2759 Plants Plants 74.7 7.83e-14   NR XP_011396886.1 3075 g8818 i0 44 4.40131578947368 75 42 74 0 8 232 124 198 XP_011396886.1 TATA-box-binding protein 2 [Auxenochlorella protothecoides] diamond 1338 74.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
28993962 28993962 PRJNA1068513_S_NODE_3348_length_479_cov_3.544335_g3303_i0 PRJNA1068513 3348 479 3.544335 16.97736465 Coccomyxa elongata 1965095 Plants Plants 65.9 6.62e-11   NR CAL8468898.1 1965095 g3303 i0 42.3 0.488517745302714 78 41 48.9 2 46 279 10 83 CAL8468898.1 g8439 [Coccomyxa elongata] diamond 234 65.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa elongata
29301039 29301039 PRJNA1068513_S_NODE_12049_length_253_cov_0.866667_g12003_i0 PRJNA1068513 12049 253 0.866667 2.19266751 root 1 Root_unresolved Root_unresolved 46.6 0.0019   NR XP_005651365.1 574566 g12003 i0 36.2 5.26482213438735 58 37 68.8 0 226 53 175 232 XP_005651365.1 fibronectin type III [Coccomyxa subellipsoidea C-169] diamond 1332 46.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
29404163 29404163 PRJNA1068513_S_NODE_9669_length_289_cov_1.379630_g9623_i0 PRJNA1068513 9669 289 1.37963 3.9871307 Tetradesmus obliquus 3088 Plants Plants 49.7 1.96e-4   NR WIA42092.1 3088 g9623 i0 34 1.00692041522491 97 54 93.4 3 285 16 135 228 WIA42092.1 hypothetical protein OEZ86_009367 [Tetradesmus obliquus] diamond 291 49.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
29972510 29972510 PRJNA1068513_S_NODE_6851_length_348_cov_4.098182_g6805_i0 PRJNA1068513 6851 348 4.098182 14.26167336 Polytomella parva 51329 Plants Plants 148 8.62e-41   NR QKY14960.1 51329 g6805 i0 71.3 11.3879310344828 101 29 87.1 0 346 44 257 357 QKY14960.1 pyruvate dehydrogenase E1 component subunit alpha - subunit beta (PDh-E1 BETA) [Polytomella parva] diamond 3963 148 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella parva
31710820 31710820 PRJNA1068513_S_NODE_2117_length_559_cov_24.987654_g2075_i0 PRJNA1068513 2117 559 24.987654 139.68098586 Pedinophyceae sp. YPF-7 765719 Plants Plants 102 1.71e-24   NR CAG9460866.1 765719 g2075 i0 46.1 2.20572450805009 141 57 75.7 2 44 466 1 122 CAG9460866.1 unnamed protein product [Pedinophyceae sp. YPF-701] diamond 1233 102 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae       Pedinophyceae sp. YPF-701
31860362 31860362 PRJNA1068513_S_NODE_13197_length_243_cov_1.529412_g13151_i0 PRJNA1068513 13197 243 1.529412 3.71647116 Chlamydomonadales 3042 Plants Plants 50.8 3.63e-5   NR PNH03195.1 47790 g13151 i0 45 1.30864197530864 60 24 63 1 238 86 168 227 PNH03195.1 T-complex protein 1 subunit zeta, partial [Tetrabaena socialis] diamond 318 51.2 0.9921875 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Tetrabaenaceae Tetrabaena Tetrabaena socialis
32438751 32438751 PRJNA1068513_S_NODE_7279_length_338_cov_1.430189_g7233_i0 PRJNA1068513 7279 338 1.430189 4.83403882 Pedinophyceae sp. YPF-7 765719 Plants Plants 80.5 2.46e-15   NR CAG9467008.1 765719 g7233 i0 46.5 1.2603550295858 71 38 63 0 323 111 227 297 CAG9467008.1 unnamed protein product [Pedinophyceae sp. YPF-701] diamond 426 80.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae       Pedinophyceae sp. YPF-701
32848402 32848402 PRJNA1068513_S_NODE_720_length_752_cov_15.499264_g684_i0 PRJNA1068513 720 752 15.499264 116.55446528 Chlamydomonas eustigma 1157962 Plants Plants 199 1.59e-60   NR GAX77325.1 1157962 g684 i0 66.4 3 149 50 59.4 0 182 628 56 204 GAX77325.1 hypothetical protein CEUSTIGMA_g4771.t1 [Chlamydomonas eustigma] diamond 2256 199 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas eustigma

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;