RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1068513", tax_clade = "Haptista" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 4 ✖

tax_phylum 1

tax_clade 1

  • Haptista · 4 ✖

bioproject 1

  • PRJNA1068513 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27161862 27161862 PRJNA1068513_S_NODE_11602_length_259_cov_0.881720_g11556_i0 PRJNA1068513 11602 259 0.88172 2.2836548 Prymnesium parvum 97485 Haptophyta other_Eukaryota 92 2.1e-19   NR KAL1526066.1 97485 g11556 i0 59.7 2.6988416988417 77 31 89.2 0 232 2 788 864 KAL1526066.1 hypothetical protein AB1Y20_020887 [Prymnesium parvum] diamond 699 92 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
27438397 27438397 PRJNA1068513_S_NODE_2783_length_511_cov_2.990868_g2739_i0 PRJNA1068513 2783 511 2.990868 15.28333548 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 171 3.959999999999999e-48   NR KAL1512169.1 97485 g2739 i0 59.9 8.08414872798434 137 55 80.4 0 3 413 281 417 KAL1512169.1 hypothetical protein AB1Y20_005435 [Prymnesium parvum] diamond 4131 171 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
29877867 29877867 PRJNA1068513_S_NODE_10851_length_270_cov_1.852792_g10805_i0 PRJNA1068513 10851 270 1.852792 5.0025384 Chrysochromulina tobinii 1460289 Haptophyta other_Eukaryota 92 1.9300000000000003e-21   NR KOO24042.1 1460289 g10805 i0 54.5 0.733333333333333 66 30 73.3 0 259 62 79 144 KOO24042.1 unc119 [Chrysochromulina tobinii] diamond 198 92 1 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina tobinii
31354546 31354546 PRJNA1068513_S_NODE_4756_length_415_cov_3.043860_g4711_i0 PRJNA1068513 4756 415 3.04386 12.632019 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 80.5 2.84e-16   NR KAL1510948.1 97485 g4711 i0 45.1 2.03132530120482 102 44 72.3 2 65 364 45 136 KAL1510948.1 hypothetical protein AB1Y20_005775 [Prymnesium parvum] diamond 843 80.9 0.995055624227441 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;