RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1068513", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA1068513 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29309333 29309333 PRJNA1068513_S_NODE_12929_length_246_cov_0.797688_g12883_i0 PRJNA1068513 12929 246 0.797688 1.96231248 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 43.1 0.0263   NR MEO5903356.1 2026741 g12883 i0 37.9 0.707317073170732 58 30 63.4 2 20 175 165 222 MEO5903356.1 glycosyltransferase [Gemmatimonadaceae bacterium] diamond 174 43.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31797083 31797083 PRJNA1068513_S_NODE_8517_length_310_cov_1.717300_g8471_i0 PRJNA1068513 8517 310 1.7173 5.32363 Bacteria 2 Bacteria Bacteria 60.8 1.74e-8   NR MBX6331852.1 2026741 g8471 i0 52.6 1.13225806451613 57 25 55.2 1 310 140 168 222 MBX6331852.1 aquaporin [Gemmatimonadaceae bacterium] diamond 351 60.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;