RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA1067443" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1067443 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16758517 16758517 PRJNA1067443_P_NODE_24454_length_197_cov_4.903226_g24436_i0 PRJNA1067443 24454 197 4.903226 9.65935522 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 342 9.039999999999999e-90   NTclustered gi|2874254096|emb|OY970179.1| 412056 g24436 i0 97.97 111.548223350254 197 4 100 0 1 197 558035 558231 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05521.bin.c.1 genome assembly, chromosome: 1 blastn 21975 342 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
27825489 27825489 PRJNA1067443_P_NODE_13104_length_267_cov_1.427835_g13086_i0 PRJNA1067443 13104 267 1.427835 3.81231945 Lacunisphaera limnophila 1838286 Bacteria Bacteria 47 0.00142   NR WP_157772521.1 1838286 g13086 i0 55.3 0.528089887640449 47 20 51.7 1 266 129 234 280 WP_157772521.1 FkbM family methyltransferase [Lacunisphaera limnophila] diamond 141 47 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Lacunisphaera Lacunisphaera limnophila
28267226 28267226 PRJNA1067443_P_NODE_15166_length_256_cov_1.650273_g15148_i0 PRJNA1067443 15166 256 1.650273 4.22469888 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 62.8 7.31e-10   NR MCA1660249.1 2026800 g15148 i0 77.8 0.52734375 45 10 52.7 0 171 37 128 172 MCA1660249.1 hypothetical protein [Verrucomicrobiaceae bacterium] diamond 135 62.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
28583345 28583345 PRJNA1067443_P_NODE_23327_length_234_cov_3.900621_g23309_i0 PRJNA1067443 23327 234 3.900621 9.12745314 Prosthecobacter sp. 1965333 Bacteria Bacteria 127 4.03e-32   NR WP_395733614.1 1965333 g23309 i0 89 1.87179487179487 73 8 93.6 0 227 9 2711 2783 WP_395733614.1 autotransporter-associated beta strand repeat-containing protein [Prosthecobacter sp.] diamond 438 127 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
29151878 29151878 PRJNA1067443_P_NODE_16709_length_250_cov_3.740113_g16691_i0 PRJNA1067443 16709 250 3.740113 9.3502825 Prosthecobacter sp. 1965333 Bacteria Bacteria 138 1.55e-38   NR WP_395746109.1 1965333 g16691 i0 92 1.8 75 6 90 0 225 1 83 157 WP_395746109.1 HAD family hydrolase [Prosthecobacter sp.] diamond 450 138 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
30161832 30161832 PRJNA1067443_P_NODE_22612_length_241_cov_0.916667_g22594_i0 PRJNA1067443 22612 241 0.916667 2.20916747 Verrucomicrobiales bacterium VVV1 2015575 Bacteria Bacteria 159 1.15e-46   NR OYV04468.1 2015575 g22594 i0 100 1.99170124481328 80 0 99.6 0 241 2 97 176 OYV04468.1 MAG: enoyl-CoA hydratase [Verrucomicrobiales bacterium VVV1] diamond 480 159 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium VVV1
31742288 31742288 PRJNA1067443_P_NODE_17077_length_250_cov_0.870056_g17059_i0 PRJNA1067443 17077 250 0.870056 2.17514 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 98.2 1.2300000000000002e-21   NR HSY12618.1 2499141 g17059 i0 56.3 3 87 30 99.6 3 249 1 329 411 HSY12618.1 Ig-like domain-containing protein [Verrucomicrobiia bacterium] diamond 750 98.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
32438726 32438726 PRJNA1067443_P_NODE_21159_length_243_cov_1.358824_g21141_i0 PRJNA1067443 21159 243 1.358824 3.30194232 Chthoniobacter sp. 2510640 Bacteria Bacteria 56.6 4.49e-7   NR MEA3186743.1 2510640 g21141 i0 37.6 1.04938271604938 85 48 98.8 2 2 241 76 160 MEA3186743.1 integrase [Chthoniobacter sp.] diamond 255 56.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;