RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1067443", tax_phylum = "Nitrospirota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 6 ✖

tax_phylum 1

  • Nitrospirota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1067443 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15484075 15484075 PRJNA1067443_P_NODE_1313_length_531_cov_7.187773_g1295_i0 PRJNA1067443 1313 531 7.187773 38.16707463 Nitrospira sp. 70125 Bacteria Bacteria 532 1.53e-146   NTclustered gi|2194428397|gb|CP092079.1| 70125 g1295 i0 86.503 1.51977401129944 489 60 92 6 23 508 3575485 3575970 MAG: Nitrospira sp. isolate UBC3 chromosome blastn 807 532 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
19307077 19307077 PRJNA1067443_P_NODE_19876_length_245_cov_1.656977_g19858_i0 PRJNA1067443 19876 245 1.656977 4.05959365 Nitrospira sp. 70125 Bacteria Bacteria 198 2.68e-46   NTclustered gi|2863125063|dbj|AP038805.1| 70125 g19858 i0 86.264 0.742857142857143 182 25 74 0 53 234 2630487 2630668 MAG: Nitrospira sp. AFB01 DNA, complete genome blastn 182 198 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
27793963 27793963 PRJNA1067443_P_NODE_464_length_705_cov_7.469937_g449_i0 PRJNA1067443 464 705 7.469937 52.66305585 Candidatus Manganitrophus morganii 2890059 Bacteria Bacteria 436 4.89e-150   NR MCG3113395.1 2890059 g449 i0 98.7 1.89787234042553 223 3 94.9 0 11 679 45 267 MCG3113395.1 AAA family ATPase [Candidatus Manganitrophus morganii] diamond 1338 436 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Candidatus Troglogloeales Candidatus Manganitrophaceae Candidatus Manganitrophus Candidatus Manganitrophus morganii
28614801 28614801 PRJNA1067443_P_NODE_9167_length_291_cov_1.412844_g9149_i0 PRJNA1067443 9167 291 1.412844 4.11137604 Nitrospirales bacterium 2358460 Bacteria Bacteria 42.7 0.0287   NR MDR4459253.1 2358460 g9149 i0 43.8 0.65979381443299 64 33 62.9 2 50 232 61 124 MDR4459253.1 helix-turn-helix domain-containing protein [Nitrospirales bacterium] diamond 192 42.7 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales     Nitrospirales bacterium
31963777 31963777 PRJNA1067443_P_NODE_9658_length_287_cov_2.593458_g9640_i0 PRJNA1067443 9658 287 2.593458 7.44322446 Nitrospira sp. 70125 Bacteria Bacteria 128 4.95e-36   NR HNM20573.1 70125 g9640 i0 74.4 0.898954703832753 86 22 89.9 0 259 2 7 92 HNM20573.1 hypothetical protein [Nitrospira sp.] diamond 258 128 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
32185448 32185448 PRJNA1067443_P_NODE_24318_length_205_cov_4.030303_g24300_i0 PRJNA1067443 24318 205 4.030303 8.26212115 Nitrospira sp. 70125 Bacteria Bacteria 129 1.44e-33   NR MBM4145436.1 70125 g24300 i0 83.6 0.980487804878049 67 11 98 0 201 1 177 243 MBM4145436.1 amidohydrolase family protein [Nitrospira sp.] diamond 201 129 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;