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contig_metadata

32 rows where bioproject = "PRJNA1067443" and tax_phylum = "Acidobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 32 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1067443 · 32 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
181519 181519 PRJNA1067443_P_NODE_18761_length_247_cov_0.885057_g18743_i0 PRJNA1067443 18761 247 0.885057 2.18609079 Holophagaceae bacterium 2052165 Bacteria Bacteria 121 8.69e-33   NR HET8715726.1 2052165 g18743 i0 80.2 9.69230769230769 81 16 98.4 0 3 245 57 137 HET8715726.1 enoyl-CoA hydratase-related protein [Holophagaceae bacterium] diamond 2394 121 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae   Holophagaceae bacterium
2732000 2732000 PRJNA1067443_P_NODE_19623_length_246_cov_0.890173_g19605_i0 PRJNA1067443 19623 246 0.890173 2.18982558 Bryobacter aggregatus 360054 Bacteria Bacteria 105 4.35e-24   NR WP_051670866.1 360054 g19605 i0 59 0.951219512195122 78 30 95.1 1 235 2 669 744 WP_051670866.1 protein kinase domain-containing protein [Bryobacter aggregatus] diamond 234 105 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae Bryobacter Bryobacter aggregatus
5284265 5284265 PRJNA1067443_P_NODE_19645_length_246_cov_0.890173_g19627_i0 PRJNA1067443 19645 246 0.890173 2.18982558 Geothrix sp. 21YS21S-4 3068889 Bacteria Bacteria 246 9.5e-61   NTclustered gi|2565867660|gb|CP132719.1| 3068889 g19627 i0 92.486 41.1178861788618 173 12 70 1 68 239 2642830 2643002 Geothrix sp. 21YS21S-4 chromosome, complete genome blastn 10115 246 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Geothrix Geothrix sp. 21YS21S-4
12492252 12492252 PRJNA1067443_P_NODE_13030_length_267_cov_2.103093_g13012_i0 PRJNA1067443 13030 267 2.103093 5.61525831 Acidobacteriaceae 204434 Bacteria Bacteria 455 1.5900000000000002e-123   NTclustered gi|470484216|ref|NR_076636.1| 33075 g13012 i0 98.084 98.6666666666667 261 5 98 0 7 267 908 648 Acidobacterium capsulatum strain 161 23S ribosomal RNA gene, complete sequence blastn 26344 455 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Acidobacterium Acidobacterium capsulatum
19307303 19307303 PRJNA1067443_P_NODE_7916_length_306_cov_1.982833_g7898_i0 PRJNA1067443 7916 306 1.982833 6.06746898 Pseudomonadati 3379134 Bacteria Bacteria 87.4 1.59e-17   NR HYY97396.1 2283092 g7898 i0 65 3.90196078431373 60 20 57.8 1 3 179 786 845 HYY97396.1 PAS domain S-box protein [Pyrinomonadaceae bacterium] diamond 1194 87.8 0.995444191343964 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
24407367 24407367 PRJNA1067443_P_NODE_20020_length_245_cov_0.895349_g20002_i0 PRJNA1067443 20020 245 0.895349 2.19360505 Acidobacteriota bacterium 1978231 Bacteria Bacteria 125 9.56e-32   NR MBI3048617.1 1978231 g20002 i0 79.5 1.86122448979592 73 15 89.4 0 27 245 246 318 MBI3048617.1 serine/threonine protein kinase [Acidobacteriota bacterium] diamond 456 125 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
26718726 26718726 PRJNA1067443_P_NODE_21241_length_243_cov_0.905882_g21223_i0 PRJNA1067443 21241 243 0.905882 2.20129326 Bryobacterales bacterium 2026791 Bacteria Bacteria 136 1.02e-35   NR MBL8212468.1 2026791 g21223 i0 76.3 0.987654320987654 80 19 98.8 0 3 242 254 333 MBL8212468.1 ABC transporter substrate-binding protein [Bryobacterales bacterium] diamond 240 136 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium
27035659 27035659 PRJNA1067443_P_NODE_2142_length_462_cov_1.311054_g2124_i0 PRJNA1067443 2142 462 1.311054 6.05706948 Geothrix sp. 21YS21S-4 3068889 Bacteria Bacteria 48.9 0.00203   NR WP_306589573.1 3068889 g2124 i0 60.6 0.214285714285714 33 13 21.4 0 99 1 4 36 WP_306589573.1 restriction endonuclease [Geothrix sp. 21YS21S-4] diamond 99 48.9 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Geothrix Geothrix sp. 21YS21S-4
27098866 27098866 PRJNA1067443_P_NODE_22102_length_242_cov_0.911243_g22084_i0 PRJNA1067443 22102 242 0.911243 2.20520806 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 158 7.19e-44   NR MFN3324727.1 2212468 g22084 i0 87.5 0.991735537190083 80 10 99.2 0 1 240 106 185 MFN3324727.1 PQQ-binding-like beta-propeller repeat protein [Bryobacteraceae bacterium] diamond 240 158 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
27920051 27920051 PRJNA1067443_P_NODE_21585_length_242_cov_3.467456_g21567_i0 PRJNA1067443 21585 242 3.467456 8.39124352 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 74.7 1.12e-13   NR HRH40059.1 2283092 g21567 i0 54.7 1.82231404958678 75 33 91.7 1 18 239 1 75 HRH40059.1 hypothetical protein [Pyrinomonadaceae bacterium] diamond 441 74.7 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
27983245 27983245 PRJNA1067443_P_NODE_5585_length_343_cov_1.796296_g5567_i0 PRJNA1067443 5585 343 1.796296 6.16129528 Bryobacterales bacterium 2026791 Bacteria Bacteria 139 3.24e-38   NR MCU1262999.1 2026791 g5567 i0 93.2 0.647230320699708 74 5 64.7 0 342 121 179 252 MCU1262999.1 hypothetical protein [Bryobacterales bacterium] diamond 222 139 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium
28385311 28385311 PRJNA1067443_P_NODE_22506_length_241_cov_0.916667_g22488_i0 PRJNA1067443 22506 241 0.916667 2.20916747 Acidobacteriota 57723 Bacteria Bacteria 99.4 3.78e-22   NR HEX2443466.1 2910147 g22488 i0 67.1 4.91701244813278 79 26 98.3 0 239 3 390 468 HEX2443466.1 winged helix-turn-helix domain-containing protein [Vicinamibacterales bacterium] diamond 1185 99.4 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
28551762 28551762 PRJNA1067443_P_NODE_18627_length_247_cov_1.706897_g18609_i0 PRJNA1067443 18627 247 1.706897 4.21603559 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 140 1.64e-36   NR MCY7347869.1 2283092 g18609 i0 76.5 0.983805668016194 81 19 98.4 0 3 245 382 462 MCY7347869.1 ComEC/Rec2 family competence protein [Pyrinomonadaceae bacterium] diamond 243 140 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
28772557 28772557 PRJNA1067443_P_NODE_5987_length_336_cov_1.463878_g5969_i0 PRJNA1067443 5987 336 1.463878 4.91863008 Bryobacterales bacterium 2026791 Bacteria Bacteria 132 2.18e-33   NR MCU1263000.1 2026791 g5969 i0 79.5 1.57142857142857 88 18 78.6 0 1 264 466 553 MCU1263000.1 family transposase, core domain [Bryobacterales bacterium] diamond 528 132 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium
28795601 28795601 PRJNA1067443_P_NODE_8827_length_295_cov_0.927928_g8809_i0 PRJNA1067443 8827 295 0.927928 2.7373876 Pseudomonadati 3379134 Bacteria Bacteria 191 6.559999999999998e-56   NR MCU1263000.1 2026791 g8809 i0 88.7 3.94576271186441 97 11 98.6 0 3 293 75 171 MCU1263000.1 family transposase, core domain [Bryobacterales bacterium] diamond 1164 191 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium
29056887 29056887 PRJNA1067443_P_NODE_14068_length_262_cov_1.306878_g14050_i0 PRJNA1067443 14068 262 1.306878 3.42402036 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 174 2.06e-51   NR GIU79590.1 2212468 g14050 i0 98.8 0.984732824427481 86 1 98.5 0 3 260 254 339 GIU79590.1 MAG: hypothetical protein KatS3mg005_2828 [Bryobacteraceae bacterium] diamond 258 174 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
29341057 29341057 PRJNA1067443_P_NODE_13209_length_266_cov_2.383420_g13191_i0 PRJNA1067443 13209 266 2.38342 6.3398972 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 94.4 1.42e-22   NR HTS74627.1 2212468 g13191 i0 53.9 1.99624060150376 76 35 85.7 0 229 2 17 92 HTS74627.1 BrnA antitoxin family protein [Bryobacteraceae bacterium] diamond 531 94.4 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
29404125 29404125 PRJNA1067443_P_NODE_11189_length_278_cov_1.502439_g11171_i0 PRJNA1067443 11189 278 1.502439 4.17678042 Acidobacteriota bacterium 1978231 Bacteria Bacteria 100 2.86e-22   NR MDP9052021.1 1978231 g11171 i0 51.6 0.982014388489209 91 44 98.2 0 5 277 809 899 MDP9052021.1 TonB-dependent receptor [Acidobacteriota bacterium] diamond 273 100 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
29435385 29435385 PRJNA1067443_P_NODE_8010_length_305_cov_1.327586_g7992_i0 PRJNA1067443 8010 305 1.327586 4.0491373 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 162 3.7e-47   NR HEY1214909.1 2212468 g7992 i0 70.3 5.92131147540984 101 30 99.3 0 305 3 102 202 HEY1214909.1 hypothetical protein [Bryobacteraceae bacterium] diamond 1806 162 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
29846165 29846165 PRJNA1067443_P_NODE_19411_length_246_cov_0.890173_g19393_i0 PRJNA1067443 19411 246 0.890173 2.18982558 Candidatus Angelobacter sp. 2976921 Bacteria Bacteria 54.7 2.31e-6   NR HWT89169.1 2976921 g19393 i0 63 1.58536585365854 46 17 56.1 0 142 5 5 50 HWT89169.1 M14 family zinc carboxypeptidase [Candidatus Angelobacter sp.] diamond 390 54.7 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia     Candidatus Angelobacter Candidatus Angelobacter sp.
30067216 30067216 PRJNA1067443_P_NODE_20072_length_245_cov_0.895349_g20054_i0 PRJNA1067443 20072 245 0.895349 2.19360505 Acidobacteriota bacterium 1978231 Bacteria Bacteria 64.3 9.66e-10   NR MDQ3321242.1 1978231 g20054 i0 77.5 0.489795918367347 40 9 49 0 124 243 1 40 MDQ3321242.1 glycoside hydrolase family 15 protein [Acidobacteriota bacterium] diamond 120 64.3 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30121929 30121929 PRJNA1067443_P_NODE_22572_length_241_cov_0.916667_g22554_i0 PRJNA1067443 22572 241 0.916667 2.20916747 Pseudomonadati 3379134 Bacteria Bacteria 51.2 3.72e-5   NR HEV2246948.1 2081523 g22554 i0 63.6 1.55601659751037 44 16 54.8 0 136 5 55 98 HEV2246948.1 hypothetical protein [Terriglobia bacterium] diamond 375 51.6 0.992248062015504 Bacteria   Pseudomonadati Acidobacteriota Terriglobia       Terriglobia bacterium
30352196 30352196 PRJNA1067443_P_NODE_19852_length_245_cov_1.744186_g19834_i0 PRJNA1067443 19852 245 1.744186 4.2732557 Terriglobales bacterium 2282142 Bacteria Bacteria 133 6.069999999999998e-35   NR HVO93381.1 2282142 g19834 i0 82.7 2.97551020408163 81 14 99.2 0 243 1 111 191 HVO93381.1 MFS transporter [Terriglobales bacterium] diamond 729 133 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales     Terriglobales bacterium
30572562 30572562 PRJNA1067443_P_NODE_15253_length_256_cov_1.289617_g15235_i0 PRJNA1067443 15253 256 1.289617 3.30141952 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 86.3 2.18e-17   NR HJR59338.1 2910147 g15235 i0 60.2 4.08984375 88 22 99.6 4 255 1 1200 1277 HJR59338.1 DEAD/DEAH box helicase [Vicinamibacterales bacterium] diamond 1047 86.3 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
30952128 30952128 PRJNA1067443_P_NODE_24334_length_204_cov_4.099237_g24316_i0 PRJNA1067443 24334 204 4.099237 8.36244348 Acidobacteriota bacterium 1978231 Bacteria Bacteria 47 6.05e-4   NR MBU6496761.1 1978231 g24316 i0 40.3 0.911764705882353 62 35 91.2 1 202 17 22 81 MBU6496761.1 M1 family peptidase [Acidobacteriota bacterium] diamond 186 47 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31394644 31394644 PRJNA1067443_P_NODE_576_length_665_cov_32.722973_g559_i0 PRJNA1067443 576 665 32.722973 217.60777045 Acidobacteriota bacterium 1978231 Bacteria Bacteria 196 1.86e-58   NR MCU0225938.1 1978231 g559 i0 57.1 7.06466165413534 177 70 79.8 3 111 641 6 176 MCU0225938.1 ATP phosphoribosyltransferase [Acidobacteriota bacterium] diamond 4698 196 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31489620 31489620 PRJNA1067443_P_NODE_18156_length_248_cov_0.880000_g18138_i0 PRJNA1067443 18156 248 0.88 2.1824 Acidobacteriota bacterium 1978231 Bacteria Bacteria 154 3.56e-44   NR MBI3422473.1 1978231 g18138 i0 91.5 0.991935483870968 82 7 99.2 0 246 1 24 105 MBI3422473.1 prolyl oligopeptidase family serine peptidase [Acidobacteriota bacterium] diamond 246 154 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31521126 31521126 PRJNA1067443_P_NODE_10396_length_283_cov_1.242857_g10378_i0 PRJNA1067443 10396 283 1.242857 3.51728531 Terriglobales bacterium 2282142 Bacteria Bacteria 155 3.56e-45   NR HKR85934.1 2282142 g10378 i0 90.2 0.869257950530035 82 8 86.9 0 280 35 7 88 HKR85934.1 hypothetical protein [Terriglobales bacterium] diamond 246 155 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales     Terriglobales bacterium
31575977 31575977 PRJNA1067443_P_NODE_15736_length_253_cov_4.422222_g15718_i0 PRJNA1067443 15736 253 4.422222 11.18822166 Bacteria 2 Bacteria Bacteria 111 4.4000000000000005e-27   NR PYR88594.1 1978231 g15718 i0 74.3 2.4901185770751 70 18 83 0 24 233 1 70 PYR88594.1 MAG: type IV pili twitching motility protein PilT [Acidobacteriota bacterium] diamond 630 112 0.991071428571429 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
32280485 32280485 PRJNA1067443_P_NODE_3179_length_409_cov_9.654762_g3161_i0 PRJNA1067443 3179 409 9.654762 39.48797658 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 58.2 7.18e-7   NR HMT09697.1 2283092 g3161 i0 92.3 0.381418092909535 26 2 19.1 0 322 399 1 26 HMT09697.1 RtcB family protein [Pyrinomonadaceae bacterium] diamond 156 58.2 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
32406902 32406902 PRJNA1067443_P_NODE_17139_length_250_cov_0.870056_g17121_i0 PRJNA1067443 17139 250 0.870056 2.17514 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 122 3.75e-30   NR HEX8397647.1 2283092 g17121 i0 71.8 1.02 85 21 98.4 1 3 248 140 224 HEX8397647.1 zinc-dependent metalloprotease family protein [Pyrinomonadaceae bacterium] diamond 255 122 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
32753956 32753956 PRJNA1067443_P_NODE_21320_length_243_cov_0.905882_g21302_i0 PRJNA1067443 21320 243 0.905882 2.20129326 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 120 6.04e-31   NR MEZ5415871.1 2910147 g21302 i0 76.3 0.987654320987654 80 18 98.8 1 3 242 25 103 MEZ5415871.1 protein translocase subunit SecF [Vicinamibacterales bacterium] diamond 240 120 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;