RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1067443" and tax_kingdom = "Orthornavirae"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 5 ✖

bioproject 1

  • PRJNA1067443 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6116761 6116761 PRJNA1067443_P_NODE_945_length_581_cov_7.732283_g927_i0 PRJNA1067443 945 581 7.732283 44.92456423 Pestivirus 11095 Viruses Viruses 946 0   NTclustered gi|2905035932|gb|PQ782225.1| 11099 g927 i0 96.041 90.6230636833047 581 23 100 0 1 581 7214 6634 Bovine viral diarrhea virus 1 isolate BVDV-1m-IM-2018, complete genome blastn 52652 952 0.993697478991597 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
10384592 10384592 PRJNA1067443_P_NODE_1069_length_564_cov_41.763747_g1051_i0 PRJNA1067443 1069 564 41.763747 235.54753308 Pestivirus bovis 3052619 Viruses Viruses 896 0   NTclustered gi|800924328|gb|KP941589.1| 11099 g1051 i0 96.66 95.5656028368794 539 18 96 0 1 539 10709 10171 Bovine viral diarrhea virus 1 strain USMARC-55923 polyprotein gene, complete cds blastn 53899 896 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
11660366 11660366 PRJNA1067443_P_NODE_890_length_589_cov_14.143411_g872_i0 PRJNA1067443 890 589 14.143411 83.30469079 Jujube closterovirus 1 3043313 Viruses Viruses 54.7 0.016   NTclustered gi|2496749738|gb|OP673405.1| 3043313 g872 i0 100 0.0492359932088285 29 0 5 0 1 29 6 34 Jujube closterovirus 1 isolate AKS15-20, complete genome blastn 29 54.7 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Closteroviridae   Jujube closterovirus 1
15484458 15484458 PRJNA1067443_P_NODE_9333_length_289_cov_6.555556_g9315_i0 PRJNA1067443 9333 289 6.555556 18.94555684 Porcine bastrovirus 2588662 Viruses Viruses 52.8 0.027   NTclustered gi|1682068313|gb|MK387176.1| 2588662 g9315 i0 100 0.0968858131487889 28 0 10 0 262 289 41 14 Porcine bastrovirus isolate PBastV_USA 2017-1, complete genome blastn 28 52.8 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Porcine bastrovirus
23133880 23133880 PRJNA1067443_P_NODE_23939_length_227_cov_2.487013_g23921_i0 PRJNA1067443 23939 227 2.487013 5.64551951 Sopidub virus 3131684 Viruses Viruses 115 2.54e-21   NTclustered gi|2717323145|gb|PP173985.1| 3131684 g23921 i0 93.506 15.4273127753304 77 5 34 0 1 77 2202 2126 MAG: Sopidub virus isolate SP1B_k141_213983 genomic sequence blastn 3502 115 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Picobirnaviridae   Sopidub virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;