RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA1067443", tax_kingdom = "Fusobacteriati" and tax_phylum = "Fusobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Fusobacteriota · 8 ✖

tax_kingdom 1

  • Fusobacteriati · 8 ✖

bioproject 1

  • PRJNA1067443 · 8 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2732107 2732107 PRJNA1067443_P_NODE_2563_length_436_cov_12.851240_g2545_i0 PRJNA1067443 2563 436 12.85124 56.0314064 Fusobacterium animalis 76859 Bacteria Bacteria 645 1.5199999999999993e-180   NTclustered gi|2704881042|gb|CP056003.1| 76859 g2545 i0 94.903 11.4403669724771 412 21 94 0 1 412 1327798 1328209 Fusobacterium animalis strain SB018 chromosome, complete genome blastn 4988 645 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium animalis
5284347 5284347 PRJNA1067443_P_NODE_23985_length_226_cov_3.601307_g23967_i0 PRJNA1067443 23985 226 3.601307 8.13895382 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 390 3.749999999999999e-104   NTclustered gi|1276718681|gb|CP024704.1| 2663009 g23967 i0 97.788 11.9955752212389 226 5 100 0 1 226 1204030 1204255 Fusobacterium pseudoperiodonticum strain KCOM 2555 chromosome, complete genome blastn 2711 390 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
7834098 7834098 PRJNA1067443_P_NODE_23207_length_236_cov_2.625767_g23189_i0 PRJNA1067443 23207 236 2.625767 6.19681012 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 322 1.46e-83   NTclustered gi|922689899|gb|CP012410.1| 712357 g23189 i0 91.489 0.995762711864407 235 18 99 2 3 236 1704925 1704692 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 235 322 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
9108968 9108968 PRJNA1067443_P_NODE_15888_length_253_cov_1.322222_g15870_i0 PRJNA1067443 15888 253 1.322222 3.34522166 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 462 8.95e-126   NTclustered gi|2705022034|gb|CP084128.1| 2663009 g15870 i0 99.605 99.4743083003953 253 1 100 0 1 253 848786 848534 Fusobacterium pseudoperiodonticum strain KCOM1322 chromosome, complete genome blastn 25167 462 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum
14210027 14210027 PRJNA1067443_P_NODE_11912_length_274_cov_1.263682_g11894_i0 PRJNA1067443 11912 274 1.263682 3.46248868 Fusobacterium hwasookii 1583098 Bacteria Bacteria 329 1.04e-85   NTclustered gi|958157244|gb|CP013336.1| 1307443 g11894 i0 88.321 16.992700729927 274 32 100 0 1 274 305151 304878 Fusobacterium hwasookii ChDC F206, complete genome blastn 4656 329 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium hwasookii
19307135 19307135 PRJNA1067443_P_NODE_22616_length_241_cov_0.916667_g22598_i0 PRJNA1067443 22616 241 0.916667 2.20916747 Leptotrichia wadei 157687 Bacteria Bacteria 440 3.959999999999999e-119   NTclustered gi|1708582457|dbj|AP019841.1| 157687 g22598 i0 99.585 15 241 1 100 0 1 241 1324053 1323813 Leptotrichia wadei JMUB3936 DNA, complete genome blastn 3615 440 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei
20582659 20582659 PRJNA1067443_P_NODE_21237_length_243_cov_0.905882_g21219_i0 PRJNA1067443 21237 243 0.905882 2.20129326 Leptotrichia sp. oral taxon 212 712357 Bacteria Bacteria 178 3.4599999999999993e-40   NTclustered gi|922689899|gb|CP012410.1| 712357 g21219 i0 81.279 0.901234567901235 219 41 90 0 24 242 1952899 1953117 Leptotrichia sp. oral taxon 212 strain W10393, complete genome blastn 219 178 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 212
24407255 24407255 PRJNA1067443_P_NODE_14220_length_261_cov_1.446809_g14202_i0 PRJNA1067443 14220 261 1.446809 3.77617149 Fusobacterium pseudoperiodonticum 2663009 Bacteria Bacteria 477 3.3099999999999986e-130   NTclustered gi|1276718681|gb|CP024704.1| 2663009 g14202 i0 99.617 105.88122605364 261 1 100 0 1 261 7181 7441 Fusobacterium pseudoperiodonticum strain KCOM 2555 chromosome, complete genome blastn 27635 477 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium pseudoperiodonticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;