RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1067443", tax_clade = "PVC group" and tax_phylum = "Kiritimatiellota"

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tax_superkingdom 1

tax_phylum 1

  • Kiritimatiellota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1067443 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31236219 31236219 PRJNA1067443_P_NODE_12655_length_269_cov_2.464286_g12637_i0 PRJNA1067443 12655 269 2.464286 6.62892934 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 79.7 3.28e-16   NR MFA7335086.1 2212473 g12637 i0 68.3 0.669144981412639 60 19 66.9 0 46 225 2 61 MFA7335086.1 hypothetical protein [Kiritimatiellia bacterium] diamond 180 79.7 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
31363014 31363014 PRJNA1067443_P_NODE_5976_length_336_cov_1.749049_g5958_i0 PRJNA1067443 5976 336 1.749049 5.87680464 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 59.7 1.03e-7   NR MFA7335065.1 2212473 g5958 i0 58.3 0.535714285714286 60 20 49.1 1 227 63 277 336 MFA7335065.1 hypothetical protein [Kiritimatiellia bacterium] diamond 180 59.7 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;