RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1067443", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA1067443 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2732260 2732260 PRJNA1067443_P_NODE_8103_length_303_cov_3.708696_g8085_i0 PRJNA1067443 8103 303 3.708696 11.23734888 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 149 2.1899999999999998e-40   NR YP_003540850.1 5778 g8085 i0 71.3 1 101 29 100 0 1 303 217 317 YP_003540850.1 NADH dehydrogenase subunit 4 [Vermamoeba vermiformis] diamond 303 149 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
19307264 19307264 PRJNA1067443_P_NODE_636_length_648_cov_34.133913_g618_i0 PRJNA1067443 636 648 34.133913 221.18775624 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 144 3.22e-37   NR YP_003540836.1 5778 g618 i0 55.7 2.39814814814815 131 58 60.6 0 1 393 249 379 YP_003540836.1 apocytochrome b [Vermamoeba vermiformis] diamond 1554 144 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;