RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1067370", tax_phylum = "Peploviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 6 ✖

tax_phylum 1

  • Peploviricota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1067370 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14209328 14209328 PRJNA1067370_P_NODE_116172_length_236_cov_75.404908_g115623_i0 PRJNA1067370 116172 236 75.404908 177.95558288 Lymphocryptovirus humangamma4 3050299 Viruses Viruses 267 6.94e-67   NTclustered gi|1862917033|emb|LR812981.1| 10376 g115623 i0 100 61.1567796610169 144 0 61 0 1 144 142508 142365 Human gammaherpesvirus 4 isolate HC-0002 genome assembly, chromosome: EBV blastn 14433 267 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
16315589 16315589 PRJNA1067370_P_NODE_105493_length_243_cov_12.017647_g104944_i0 PRJNA1067370 105493 243 12.017647 29.20288221 Lymphocryptovirus 10375 Viruses Viruses 278 3.3200000000000004e-70   NTclustered gi|1862917033|emb|LR812981.1| 10376 g104944 i0 100 63.1440329218107 150 0 62 0 1 150 6400 6549 Human gammaherpesvirus 4 isolate HC-0002 genome assembly, chromosome: EBV blastn 15344 278 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
19306160 19306160 PRJNA1067370_P_NODE_104016_length_244_cov_0.900585_g103467_i0 PRJNA1067370 104016 244 0.900585 2.1974274 Percavirus equidgamma2 3050281 Viruses Viruses 363 8.949999999999999e-96   NTclustered gi|2271301500|gb|MW322569.1| 12657 g103467 i0 93.469 24.4713114754098 245 15 100 1 1 244 104285 104041 Equid gammaherpesvirus 2 strain 1-141/67, complete genome blastn 5971 363 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Percavirus Percavirus equidgamma2
19306317 19306317 PRJNA1067370_P_NODE_17236_length_448_cov_47.000000_g16688_i0 PRJNA1067370 17236 448 47 210.56 Lymphocryptovirus humangamma4 3050299 Viruses Viruses 664 0   NTclustered gi|1862917033|emb|LR812981.1| 10376 g16688 i0 100 80.1339285714286 359 0 80 0 1 359 142314 141956 Human gammaherpesvirus 4 isolate HC-0002 genome assembly, chromosome: EBV blastn 35900 664 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
20139594 20139594 PRJNA1067370_P_NODE_104856_length_244_cov_0.900585_g104307_i0 PRJNA1067370 104856 244 0.900585 2.1974274 Lymphocryptovirus 10375 Viruses Viruses 451 1.86e-122   NTclustered gi|1519305892|dbj|AP019128.1| 10376 g104307 i0 100 100 244 0 100 0 1 244 129148 128905 Human gammaherpesvirus 4 UPN326_PBMC DNA, nearly complete genome blastn 24400 451 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
21415183 21415183 PRJNA1067370_P_NODE_103097_length_244_cov_0.900585_g102548_i0 PRJNA1067370 103097 244 0.900585 2.1974274 Lymphocryptovirus 10375 Viruses Viruses 451 1.86e-122   NTclustered gi|1519305892|dbj|AP019128.1| 10376 g102548 i0 100 100 244 0 100 0 1 244 41321 41564 Human gammaherpesvirus 4 UPN326_PBMC DNA, nearly complete genome blastn 24400 451 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;