RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

1 row where bioproject = "PRJNA1067370" and tax_phylum = "Candidatus Lloydiibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Lloydiibacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA1067370 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29088394 29088394 PRJNA1067370_P_NODE_45448_length_308_cov_1.668085_g44900_i0 PRJNA1067370 45448 308 1.668085 5.1377018 Candidatus Lloydbacteria bacterium CG22_combo_CG1 2750077 Bacteria Bacteria 68.6 1.49e-11   NR PIP73831.1 1974635 g44900 i0 59.6 1.06168831168831 52 20 49.7 1 196 44 154 205 PIP73831.1 MAG: hypothetical protein COW88_00735 [Candidatus Lloydbacteria bacterium CG22_combo_CG10-13_8_21_14_all_47_15] diamond 327 68.6 1 Bacteria Bacteria candidate phyla   Candidatus Lloydiibacteriota         Candidatus Lloydbacteria bacterium CG22_combo_CG10-13_8_21_14_all_47_15

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;