RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1067370" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA1067370 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27288481 27288481 PRJNA1067370_P_NODE_95163_length_247_cov_0.885057_g94614_i0 PRJNA1067370 95163 247 0.885057 2.18609079 Deltaproteobacteria bacterium SG8_13 1703398 Bacteria Bacteria 70.1 9.41e-12   NR KPJ78043.1 1703398 g94614 i0 47.9 0.88663967611336 73 38 88.7 0 235 17 1515 1587 KPJ78043.1 MAG: hypothetical protein AMJ54_05640 [Deltaproteobacteria bacterium SG8_13] diamond 219 70.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium SG8_13
28046322 28046322 PRJNA1067370_P_NODE_59705_length_280_cov_1.487923_g59156_i0 PRJNA1067370 59705 280 1.487923 4.1661844 Bradymonadales bacterium 2099667 Bacteria Bacteria 56.2 6.86e-8   NR MFA5624936.1 2099667 g59156 i0 44.6 1.39285714285714 65 32 69.6 1 51 245 1 61 MFA5624936.1 HU family DNA-binding protein [Bradymonadales bacterium] diamond 390 56.2 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales     Bradymonadales bacterium
32619600 32619600 PRJNA1067370_P_NODE_81280_length_251_cov_0.865169_g80731_i0 PRJNA1067370 81280 251 0.865169 2.17157419 Myxococcota 2818505 Bacteria Bacteria 87.4 4.68e-18   NR MBL4824254.1 2024889 g80731 i0 54.3 8.73705179282869 81 37 96.8 0 243 1 144 224 MBL4824254.1 cation diffusion facilitator family transporter [SAR324 cluster bacterium] diamond 2193 87.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;