RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1067370", tax_clade = "Opisthokonta" and tax_phylum = "Olpidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Olpidiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJNA1067370 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
180984 180984 PRJNA1067370_P_NODE_56381_length_285_cov_1.905660_g55832_i0 PRJNA1067370 56381 285 1.90566 5.431131 Eukaryota 2759 Fungi Fungi 158 2.52e-43   NR BAL15351.1 278681 g55832 i0 78.9 3 95 20 100 0 285 1 96 190 BAL15351.1 translation elongation factor 2, partial [Olpidium bornovanus] diamond 855 158 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
27320124 27320124 PRJNA1067370_P_NODE_17723_length_443_cov_1.248649_g17175_i0 PRJNA1067370 17723 443 1.248649 5.53151507 Olpidium bornovanus 278681 Fungi Fungi 186 1.1299999999999999e-52   NR BAL15351.1 278681 g17175 i0 59.2 3.96162528216704 147 60 99.5 0 442 2 157 303 BAL15351.1 translation elongation factor 2, partial [Olpidium bornovanus] diamond 1755 186 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
30952037 30952037 PRJNA1067370_P_NODE_21914_length_404_cov_1.764350_g21366_i0 PRJNA1067370 21914 404 1.76435 7.127974 Olpidium bornovanus 278681 Fungi Fungi 177 1.05e-49   NR BAL15351.1 278681 g21366 i0 60.9 0.987623762376238 133 52 98.8 0 1 399 146 278 BAL15351.1 translation elongation factor 2, partial [Olpidium bornovanus] diamond 399 177 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus
31015119 31015119 PRJNA1067370_P_NODE_99015_length_245_cov_1.790698_g98466_i0 PRJNA1067370 99015 245 1.790698 4.3872101 Olpidium bornovanus 278681 Fungi Fungi 45.8 0.00106   NR KAG5456360.1 278681 g98466 i0 43.6 4.00408163265306 55 29 67.3 1 244 80 38 90 KAG5456360.1 MAG: cytochrome b5 [Olpidium bornovanus] diamond 981 45.8 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;