RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1067370", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA1067370 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
180556 180556 PRJNA1067370_P_NODE_105921_length_243_cov_1.388235_g105372_i0 PRJNA1067370 105921 243 1.388235 3.37341105 Fibrobacterota bacterium 2052160 Bacteria Bacteria 313 9.1e-81   NTclustered gi|1958056460|gb|CP064986.1| 2052160 g105372 i0 90.417 82.1522633744856 240 19 98 4 6 243 5054700 5054937 Fibrobacteres bacterium isolate Fred_18-Q3-R57-64_MAXAC.109_cln chromosome, complete genome blastn 19963 313 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
1455880 1455880 PRJNA1067370_P_NODE_91962_length_248_cov_0.874286_g91413_i0 PRJNA1067370 91962 248 0.874286 2.16822928 Pseudomonadati 3379134 Bacteria Bacteria 131 6.08e-35   NR NLW33541.1 35828 g91413 i0 87.3 8.58870967741935 71 9 85.9 0 36 248 1 71 NLW33541.1 type I glyceraldehyde-3-phosphate dehydrogenase [Fibrobacter sp.] diamond 2130 131 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
6116310 6116310 PRJNA1067370_P_NODE_101745_length_245_cov_0.895349_g101196_i0 PRJNA1067370 101745 245 0.895349 2.19360505 Chitinivibrionales bacterium 2663014 Bacteria Bacteria 73.2 7.14e-13   NR MBD3241224.1 2663014 g101196 i0 49.4 1.6530612244898 77 31 94.3 1 245 15 182 250 MBD3241224.1 mucoidy inhibitor MuiA family protein [Chitinivibrionales bacterium] diamond 405 73.2 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinivibrionia Chitinivibrionales     Chitinivibrionales bacterium
30035704 30035704 PRJNA1067370_P_NODE_5551_length_749_cov_1.224852_g5056_i0 PRJNA1067370 5551 749 1.224852 9.17414148 Fibrobacterota bacterium 2052160 Bacteria Bacteria 47.4 0.0452   NR MDB5106804.1 2052160 g5056 i0 25.8 0.49666221628838497 124 89 49.7 1 388 17 232 352 MDB5106804.1 peptidase and in kexin sedolisin [Fibrobacterota bacterium] diamond 372 47.4 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;