RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1066877", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 1 ✖

tax_kingdom 1

  • Pseudomonadati · 1 ✖

bioproject 1

  • PRJNA1066877 · 1 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27509643 27509643 PRJNA1066877_S_NODE_3623_length_257_cov_2.644231_g3588_i0 PRJNA1066877 3623 257 2.644231 6.79567367 Sorangium cellulosum 56 Bacteria Bacteria 49.7 2.07e-5   NR WP_104977321.1 56 g3588 i0 56 0.583657587548638 50 22 58.4 0 1 150 2 51 WP_104977321.1 CsbD family protein [Sorangium cellulosum] diamond 150 49.7 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;