RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1065838" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1065838 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13766051 13766051 PRJNA1065838_S_NODE_4771_length_332_cov_2.780919_g4669_i0 PRJNA1065838 4771 332 2.780919 9.23265108 Pseudomonadati 3379134 Bacteria Bacteria 614 3.1799999999999995e-171   NTclustered gi|1226876681|gb|CP022559.1| 197 g4669 i0 100 100 332 0 100 0 1 332 701380 701049 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 33200 614 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
16314684 16314684 PRJNA1065838_S_NODE_1373_length_527_cov_2.129707_g1273_i0 PRJNA1065838 1373 527 2.129707 11.22355589 root 1 Root_unresolved Root_unresolved 974 0   NTclustered gi|1226876681|gb|CP022559.1| 197 g1273 i0 100 100 527 0 100 0 1 527 698731 698205 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 52700 974 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
27951608 27951608 PRJNA1065838_S_NODE_31045_length_170_cov_1.876033_g30943_i0 PRJNA1065838 31045 170 1.876033 3.1892561 Helicobacter pylori 210 Bacteria Bacteria 54.7 2.34e-8   NR GAA9026652.1 210 g30943 i0 92.6 1.53529411764706 27 1 47.6 1 155 75 4 29 GAA9026652.1 hypothetical protein Kyoto181A_8340 [Helicobacter pylori] diamond 261 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;