RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1065838" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1065838 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29277478 29277478 PRJNA1065838_S_NODE_12049_length_231_cov_1.093407_g11947_i0 PRJNA1065838 12049 231 1.093407 2.52577017 Candidatus Angelobacter sp. 2976921 Bacteria Bacteria 42.4 0.0408   NR HLJ90321.1 2976921 g11947 i0 48.6 0.480519480519481 37 19 48.1 0 218 108 259 295 HLJ90321.1 TIR domain-containing protein [Candidatus Angelobacter sp.] diamond 111 42.4 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia     Candidatus Angelobacter Candidatus Angelobacter sp.
29940927 29940927 PRJNA1065838_S_NODE_16111_length_214_cov_0.993939_g16009_i0 PRJNA1065838 16111 214 0.993939 2.12702946 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 60.1 3.53e-9   NR HXI40267.1 2212468 g16009 i0 47.2 0.742990654205608 53 28 74.3 0 3 161 60 112 HXI40267.1 pilus assembly protein N-terminal domain-containing protein [Bryobacteraceae bacterium] diamond 159 60.1 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
30825357 30825357 PRJNA1065838_S_NODE_10134_length_246_cov_1.055838_g10032_i0 PRJNA1065838 10134 246 1.055838 2.59736148 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 162 5.62e-50   NR MEO7651055.1 2212468 g10032 i0 100 2 82 0 100 0 246 1 13 94 MEO7651055.1 hypothetical protein [Bryobacteraceae bacterium] diamond 492 162 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;