RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1065838" and tax_kingdom = "Thermotogati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA1065838 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1454792 1454792 PRJNA1065838_S_NODE_35002_length_164_cov_0.904348_g34900_i0 PRJNA1065838 35002 164 0.904348 1.48313072 Deinococcus yunweiensis 367282 Bacteria Bacteria 287 3.45e-73   NTclustered gi|2890653062|gb|CP177252.1| 367282 g34900 i0 98.171 7.79878048780488 164 3 100 0 1 164 3601511 3601674 Deinococcus yunweiensis strain KCTC 3955 chromosome, complete genome blastn 1279 287 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus yunweiensis
30572417 30572417 PRJNA1065838_S_NODE_35553_length_163_cov_0.912281_g35451_i0 PRJNA1065838 35553 163 0.912281 1.48701803 Deinococcus sp. YIM 134 47478 Bacteria Bacteria 98.6 2.74e-22   NR WP_331825657.1 3118910 g35451 i0 96.3 0.993865030674847 54 2 99.4 0 2 163 469 522 WP_331825657.1 alpha-amylase family glycosyl hydrolase [Deinococcus sp. YIM 134068] diamond 162 98.6 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus lichenicola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;