RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1063685" and tax_phylum = "Pisuviricota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Pisuviricota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1063685 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4840048 4840048 PRJNA1063685_S_NODE_44704_length_344_cov_1.892989_g44161_i0 PRJNA1063685 44704 344 1.892989 6.51188216 Viruses 10239 Viruses Viruses 593 4.3099999999999986e-165   NTclustered gi|2806502719|gb|PQ054859.1| 2789443 g44161 i0 100 2.79941860465116 321 0 93 0 24 344 3499 3819 MAG: Skokie dicistro-like virus isolate QJ5MS4721 genomic sequence blastn 963 593 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Dicistroviridae   Skokie dicistro-like virus
9107295 9107295 PRJNA1063685_S_NODE_48628_length_325_cov_3.198413_g48085_i0 PRJNA1063685 48628 325 3.198413 10.39484225 Ustilaginoidea virens partitivirus 14 2971976 Viruses Viruses 163 6.599999999999999e-46   NR UVX28931.1 2971976 g48085 i0 82.3 1.82769230769231 96 17 88.6 0 34 321 96 191 UVX28931.1 MAG: RNA dependent RNA polymerase [Ustilaginoidea virens partitivirus 14] diamond 594 163 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Partitiviridae   Ustilaginoidea virens partitivirus 14
12933099 12933099 PRJNA1063685_S_NODE_15891_length_551_cov_13.537657_g15362_i0 PRJNA1063685 15891 551 13.537657 74.59249007 Skokie dicistro-like virus 2789443 Viruses Viruses 922 0   NTclustered gi|1935607033|gb|MT747992.1| 2789443 g15362 i0 98.47 0.949183303085299 523 8 95 0 24 546 672 1194 Skokie dicistro-like virus strain USAdf-2 polyprotein 1 and polyprotein 2 genes, complete cds blastn 523 922 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Dicistroviridae   Skokie dicistro-like virus
19305115 19305115 PRJNA1063685_S_NODE_19136_length_518_cov_7.188764_g18599_i0 PRJNA1063685 19136 518 7.188764 37.23779752 Cucurbita moschata potyvirus 2740139 Viruses Viruses 771 0   NTclustered gi|1846260041|gb|MN735449.1| 2740139 g18599 i0 94.758 95.972972972973 496 25 96 1 24 518 8576 9071 Cucurbita moschata potyvirus strain pt063-pot-16, complete genome blastn 49714 771 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae   Cucurbita moschata potyvirus
20580746 20580746 PRJNA1063685_S_NODE_45717_length_339_cov_2.281955_g45174_i0 PRJNA1063685 45717 339 2.281955 7.73582745 Polerovirus TUYV 3431793 Viruses Viruses 121 8.65e-23   NTclustered gi|2461860523|dbj|LC726803.1| 1046403 g45174 i0 96 20.811209439528 75 1 22 2 242 315 1073 1146 Brassica yellows virus DN134266_c8_g2_i1 gene for CP readthrough protein blastn 7055 121 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Sobelivirales Solemoviridae Polerovirus Polerovirus TUYV
29592964 29592964 PRJNA1063685_S_NODE_42430_length_355_cov_7.971631_g41887_i0 PRJNA1063685 42430 355 7.971631 28.29929005 Trichoderma gamsii alphapartitivirus 1 3032463 Viruses Viruses 209 5.26e-62   NR WGH72964.1 3032463 g41887 i0 86.4 0.929577464788732 110 15 93 0 18 347 70 179 WGH72964.1 MAG: putative RNA-dependent RNA polymerase [Trichoderma gamsii alphapartitivirus 1] diamond 330 209 1 Viruses   Orthornavirae Pisuviricota Duplopiviricetes Durnavirales Partitiviridae Alphapartitivirus Trichoderma gamsii alphapartitivirus 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;