RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1063685", tax_phylum = "Nitrososphaerota" and tax_superkingdom = "Archaea"

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analysis 2

tax_superkingdom 1

  • Archaea · 3 ✖

tax_phylum 1

  • Nitrososphaerota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1063685 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7832282 7832282 PRJNA1063685_S_NODE_45607_length_339_cov_6.334586_g45064_i0 PRJNA1063685 45607 339 6.334586 21.47424654 Candidatus Nitrosotenuis cloacae 1603555 Archaea Archaea 627 4.1799999999999996e-175   NTclustered gi|808354332|gb|CP011097.2| 1603555 g45064 i0 100 98.3893805309735 339 0 100 0 1 339 740993 740655 Candidatus Nitrosotenuis cloacae strain SAT1, complete genome blastn 33354 627 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosotenuis Candidatus Nitrosotenuis cloacae
24405773 24405773 PRJNA1063685_S_NODE_66860_length_259_cov_1.086022_g66317_i0 PRJNA1063685 66860 259 1.086022 2.81279698 Candidatus Nitrosotenuis aquarius 1846278 Archaea Archaea 292 1.28e-74   NTclustered gi|1279207014|gb|CP024808.1| 1846278 g66317 i0 87.903 0.957528957528958 248 30 96 0 12 259 1534194 1534441 Candidatus Nitrosotenuis aquarius strain AQ6F chromosome, complete genome blastn 248 292 1 Archaea   Thermoproteati Nitrososphaerota       Candidatus Nitrosotenuis Candidatus Nitrosotenuis aquarius
31394478 31394478 PRJNA1063685_S_NODE_59116_length_283_cov_2.371429_g58573_i0 PRJNA1063685 59116 283 2.371429 6.71114407 Nitrosopumilus sp. 2024843 Archaea Archaea 134 3.93e-37   NR MEK0336745.1 2024843 g58573 i0 66.7 2.03533568904594 96 28 97.5 2 4 279 87 182 MEK0336745.1 phage terminase large subunit [Nitrosopumilus sp.] diamond 576 134 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;