contig_metadata
12 rows where bioproject = "PRJNA1063685" and tax_phylum = "Gemmatimonadota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1454028 | 1454028 | PRJNA1063685_S_NODE_13662_length_578_cov_5.924752_g13141_i0 | PRJNA1063685 | 13662 | 578 | 5.924752 | 34.24506656 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 715 | 0 | NTclustered | gi|2874253978|emb|OY970303.1| | 412054 | g13141 | i0 | 89.157 | 84.719723183391 | 581 | 53 | 99 | 8 | 1 | 576 | 3486147 | 3485572 | MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 | blastn | 48968 | 715 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 5282537 | 5282537 | PRJNA1063685_S_NODE_5605_length_715_cov_14.691589_g5147_i0 | PRJNA1063685 | 5605 | 715 | 14.691589 | 105.04486135 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 870 | 0 | NTclustered | gi|2874253978|emb|OY970303.1| | 412054 | g5147 | i0 | 88.828 | 248.383216783217 | 725 | 60 | 99 | 18 | 1 | 713 | 3486287 | 3485572 | MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 | blastn | 177594 | 870 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 11658076 | 11658076 | PRJNA1063685_S_NODE_28370_length_441_cov_3.114130_g27829_i0 | PRJNA1063685 | 28370 | 441 | 3.11413 | 13.7333133 | Gemmatirosa kalamazoonensis | 861299 | Bacteria | Bacteria | 499 | 1.27e-136 | NTclustered | gi|575456455|gb|CP007128.1| | 861299 | g27829 | i0 | 88.443 | 42.3605442176871 | 424 | 35 | 94 | 12 | 1 | 416 | 3042722 | 3042305 | Gemmatirosa kalamazoonesis strain KBS708, complete genome | blastn | 18681 | 499 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatirosa | Gemmatirosa kalamazoonensis | |
| 15482655 | 15482655 | PRJNA1063685_S_NODE_74233_length_241_cov_2.857143_g73690_i0 | PRJNA1063685 | 74233 | 241 | 2.857143 | 6.88571463 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 337 | 5.35e-88 | NTclustered | gi|2874253978|emb|OY970303.1| | 412054 | g73690 | i0 | 92.05 | 151.278008298755 | 239 | 19 | 100 | 0 | 1 | 239 | 5292644 | 5292882 | MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 | blastn | 36458 | 337 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 28141234 | 28141234 | PRJNA1063685_S_NODE_65385_length_263_cov_1.621053_g64842_i0 | PRJNA1063685 | 65385 | 263 | 1.621053 | 4.26336939 | Gemmatimonas sp. | 1962908 | Bacteria | Bacteria | 96.3 | 9.41e-22 | NR | MQA90154.1 | 1962908 | g64842 | i0 | 55.7 | 4.03802281368821 | 88 | 33 | 99.2 | 2 | 1 | 261 | 173 | 255 | MQA90154.1 pirin family protein [Gemmatimonas sp.] | diamond | 1062 | 96.3 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonas | Gemmatimonas sp. | |
| 28330339 | 28330339 | PRJNA1063685_S_NODE_69706_length_251_cov_0.865169_g69163_i0 | PRJNA1063685 | 69706 | 251 | 0.865169 | 2.17157419 | Longimicrobiales bacterium | 2910168 | Bacteria | Bacteria | 79.3 | 5.31e-15 | NR | MDX1567991.1 | 2910168 | g69163 | i0 | 40.2 | 0.9800796812749 | 82 | 49 | 98 | 0 | 247 | 2 | 235 | 316 | MDX1567991.1 sulfate permease [Longimicrobiales bacterium] | diamond | 246 | 79.3 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Longimicrobiia | Longimicrobiales | Longimicrobiales bacterium | |||
| 30248645 | 30248645 | PRJNA1063685_S_NODE_58012_length_287_cov_2.224299_g57469_i0 | PRJNA1063685 | 58012 | 287 | 2.224299 | 6.38373813 | FCB group | 1783270 | Bacteria | Bacteria | 56.2 | 1.13e-6 | NR | OLC69051.1 | 1805193 | g57469 | i0 | 61.4 | 2.96864111498258 | 44 | 17 | 46 | 0 | 273 | 142 | 124 | 167 | OLC69051.1 MAG: hypothetical protein AUH78_24905 [Gemmatimonadetes bacterium 13_1_40CM_4_69_8] | diamond | 852 | 56.6 | 0.992932862190813 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadetes bacterium 13_1_40CM_4_69_8 | |||||
| 30762286 | 30762286 | PRJNA1063685_S_NODE_53194_length_305_cov_2.655172_g52651_i0 | PRJNA1063685 | 53194 | 305 | 2.655172 | 8.0982746 | Gemmatimonadaceae bacterium | 2026741 | Bacteria | Bacteria | 128 | 1.9e-35 | NR | HWL40450.1 | 2026741 | g52651 | i0 | 71.3 | 1.58360655737705 | 80 | 23 | 78.7 | 0 | 243 | 4 | 6 | 85 | HWL40450.1 nuclear transport factor 2 family protein [Gemmatimonadaceae bacterium] | diamond | 483 | 128 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonadaceae bacterium | ||
| 30817127 | 30817127 | PRJNA1063685_S_NODE_1894_length_919_cov_8.812057_g1571_i0 | PRJNA1063685 | 1894 | 919 | 8.812057 | 80.98280383 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 263 | 1.1999999999999997e-82 | NR | MDB4890106.1 | 2026742 | g1571 | i0 | 51.7 | 15.8552774755169 | 288 | 127 | 91.7 | 2 | 1 | 843 | 53 | 335 | MDB4890106.1 NADP-dependent oxidoreductase domain protein [Gemmatimonadota bacterium] | diamond | 14571 | 263 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium | |||||
| 32280297 | 32280297 | PRJNA1063685_S_NODE_16759_length_542_cov_7.371002_g16227_i0 | PRJNA1063685 | 16759 | 542 | 7.371002 | 39.95083084 | Gemmatimonadota bacterium | 2026742 | Bacteria | Bacteria | 127 | 3.07e-30 | NR | MCH7715181.1 | 2026742 | g16227 | i0 | 39.7 | 2.00922509225092 | 184 | 95 | 95.2 | 2 | 8 | 523 | 484 | 663 | MCH7715181.1 oligopeptide transporter, OPT family [Gemmatimonadota bacterium] | diamond | 1089 | 127 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium | |||||
| 32525305 | 32525305 | PRJNA1063685_S_NODE_64719_length_265_cov_1.302083_g64176_i0 | PRJNA1063685 | 64719 | 265 | 1.302083 | 3.45051995 | FCB group | 1783270 | Bacteria | Bacteria | 52.8 | 1.43e-5 | NR | MEJ2216291.1 | 2026742 | g64176 | i0 | 55.1 | 0.99622641509434 | 49 | 21 | 54.3 | 1 | 235 | 92 | 406 | 454 | MEJ2216291.1 hypothetical protein [Gemmatimonadota bacterium] | diamond | 264 | 52.8 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium | |||||
| 32565168 | 32565168 | PRJNA1063685_S_NODE_37139_length_384_cov_1.620579_g36596_i0 | PRJNA1063685 | 37139 | 384 | 1.620579 | 6.22302336 | Gemmatimonadales bacterium | 2448054 | Bacteria | Bacteria | 61.2 | 5.95e-8 | NR | HTL04498.1 | 2448054 | g36596 | i0 | 41.6 | 2.3671875 | 77 | 42 | 60.2 | 2 | 382 | 152 | 37 | 110 | HTL04498.1 Ig-like domain-containing protein [Gemmatimonadales bacterium] | diamond | 909 | 61.2 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadales bacterium |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;