RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1063685" and tax_phylum = "Cercozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1063685 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2730395 2730395 PRJNA1063685_S_NODE_78863_length_220_cov_8.564626_g78320_i0 PRJNA1063685 78863 220 8.564626 18.8421772 Cercomonas braziliensis 686726 SAR_Eukaryotes SAR_Eukaryotes 364 2.2e-96   NTclustered gi|262262872|gb|FJ797463.1| 686726 g78320 i0 98.095 87.0090909090909 210 3 95 1 1 209 495 286 Cercomonas braziliensis strain B13 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 19142 364 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Cercomonas Cercomonas braziliensis
5282494 5282494 PRJNA1063685_S_NODE_51265_length_313_cov_6.987500_g50722_i0 PRJNA1063685 51265 313 6.9875 21.870875 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 562 1.09e-155   NTclustered gi|238617602|gb|FJ973377.1| 188950 g50722 i0 100 97.2076677316294 304 0 97 0 1 304 321 18 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 30426 562 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
8665168 8665168 PRJNA1063685_S_NODE_39547_length_370_cov_45.410774_g39004_i0 PRJNA1063685 39547 370 45.410774 168.0198638 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 636 7.629999999999999e-178   NTclustered gi|319659368|gb|GU320605.1| 943207 g39004 i0 99.712 94.5459459459459 347 1 94 0 1 347 1817 1471 Reticulamoeba sp. COHH 9 18S ribosomal RNA gene, partial sequence blastn 34982 641 0.992199687987519 Eukaryota Sar   Cercozoa       Reticulamoeba Reticulamoeba sp. COHH 9
15482169 15482169 PRJNA1063685_S_NODE_16933_length_540_cov_9.826552_g16401_i0 PRJNA1063685 16933 540 9.826552 53.0633808 Rosculus sp. 2231160 SAR_Eukaryotes SAR_Eukaryotes 972 0   NTclustered gi|1402550473|gb|MH488759.1| 2231160 g16401 i0 99.811 17.8185185185185 530 0 98 1 1 529 1348 819 Rosculus sp. isolate CSA small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 9622 972 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus sp.
20580768 20580768 PRJNA1063685_S_NODE_48097_length_327_cov_7.342520_g47554_i0 PRJNA1063685 48097 327 7.34252 24.0100404 Protaspis grandis 361427 SAR_Eukaryotes SAR_Eukaryotes 348 3.5e-91   NTclustered gi|290760486|gb|GQ144689.1| 361427 g47554 i0 87.213 93.1987767584098 305 39 93 0 1 305 2064 1760 Protaspis grandis large subunit ribosomal RNA gene, partial sequence blastn 30476 348 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Protaspis Protaspis grandis
28203911 28203911 PRJNA1063685_S_NODE_4346_length_753_cov_17.007353_g3927_i0 PRJNA1063685 4346 753 17.007353 128.06536809 Bigelowiella natans 227086 SAR_Eukaryotes SAR_Eukaryotes 212 6.76e-65   NR AAT09082.1 227086 g3927 i0 46.2 1.88446215139442 234 119 92.4 4 5 700 4 232 AAT09082.1 glutathione-s-transferase [Bigelowiella natans] diamond 1419 212 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Bigelowiella Bigelowiella natans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;