RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1063685", tax_kingdom = "Thermotogati" and tax_phylum = "Synergistota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 3 ✖

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA1063685 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5282355 5282355 PRJNA1063685_S_NODE_36525_length_387_cov_4.614650_g35982_i0 PRJNA1063685 36525 387 4.61465 17.8586955 Fretibacterium fastidiosum 651822 Bacteria Bacteria 342 1.96e-89   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g35982 i0 84.615 90.1653746770026 364 34 95 15 1 358 68268 68615 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 34894 342 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
5282496 5282496 PRJNA1063685_S_NODE_51385_length_313_cov_2.312500_g50842_i0 PRJNA1063685 51385 313 2.3125 7.238125 Fretibacterium fastidiosum 651822 Bacteria Bacteria 361 4.28e-95   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g50842 i0 88.449 1.93610223642173 303 30 96 3 12 313 2726524 2726226 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 606 361 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
32406725 32406725 PRJNA1063685_S_NODE_16899_length_541_cov_2.014957_g16367_i0 PRJNA1063685 16899 541 2.014957 10.90091737 Thermovirga lienii 336261 Bacteria Bacteria 131 6.4e-35   NR WP_334139740.1 336261 g16367 i0 51.2 1.40850277264325 127 60 70.4 1 435 55 6 130 WP_334139740.1 ribonuclease HI family protein [Thermovirga lienii] diamond 762 131 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Thermovirgaceae Thermovirga Thermovirga lienii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;