RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1063685", tax_kingdom = "Pararnavirae" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA1063685 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1011911 1011911 PRJNA1063685_S_NODE_31841_length_416_cov_1.839650_g31299_i0 PRJNA1063685 31841 416 1.83965 7.652944 root 1 Root_unresolved Root_unresolved 99 5.07e-16   NTclustered gi|2859928216|gb|PQ511684.1| 11676 g31299 i0 95.312 28.3918269230769 64 0 15 1 348 408 9469 9532 HIV-1 isolate GB1LV100191 from USA, complete genome blastn 11811 100 0.99 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
10382646 10382646 PRJNA1063685_S_NODE_14809_length_564_cov_8.578411_g14282_i0 PRJNA1063685 14809 564 8.578411 48.38223804 Gammaretrovirus murleu 3428959 Viruses Viruses 972 0   NTclustered gi|1167936849|gb|KY574517.1| 11786 g14282 i0 99.076 94.8297872340426 541 5 96 0 24 564 7128 7668 Murine leukemia virus isolate MCF247, complete genome blastn 53484 972 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
15482298 15482298 PRJNA1063685_S_NODE_29653_length_431_cov_5.907821_g29111_i0 PRJNA1063685 29653 431 5.907821 25.46270851 Citrus endogenous pararetrovirus 1435008 Viruses Viruses 503 9.549999999999998e-138   NTclustered gi|565672279|gb|KF800044.1| 1435008 g29111 i0 92.373 4.09976798143852 354 25 82 2 1 353 5361 5009 Citrus endogenous pararetrovirus clone CB17-2, complete genome blastn 1767 503 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Citrus endogenous pararetrovirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;