RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJNA1063685", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 11 ✖

tax_clade 1

  • Sar · 11 ✖

bioproject 1

  • PRJNA1063685 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
179683 179683 PRJNA1063685_S_NODE_43901_length_348_cov_2.170909_g43358_i0 PRJNA1063685 43901 348 2.170909 7.55476332 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 162 1.46e-47   NR AFV39124.1 5807 g43358 i0 69.3 13.7586206896552 114 35 98.3 0 347 6 17 130 AFV39124.1 eukaryotic initiation factor 4A, partial [Cryptosporidium parvum] diamond 4788 163 0.993865030674847 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium parvum
3562404 3562404 PRJNA1063685_S_NODE_11223_length_611_cov_4.819703_g10708_i0 PRJNA1063685 11223 611 4.819703 29.44838533 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.017   NTclustered gi|1145259872|ref|XM_012907831.2| 5854 g10708 i0 94.286 0.199672667757774 35 2 6 0 462 496 388 354 Plasmodium reichenowi hypothetical protein partial mRNA blastn 122 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium reichenowi
9939954 9939954 PRJNA1063685_S_NODE_16448_length_545_cov_17.500000_g15917_i0 PRJNA1063685 16448 545 17.5 95.375 Apicomplexa 5794 SAR_Eukaryotes SAR_Eukaryotes 165 6.6e-36   NTclustered gi|396582138|gb|JN696678.1| 5874 g15917 i0 89.844 24.7761467889908 128 13 23 0 335 462 1262 1135 Theileria annulata 28S ribosomal RNA gene, partial sequence blastn 13503 165 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria annulata
15039686 15039686 PRJNA1063685_S_NODE_48072_length_327_cov_13.299213_g47529_i0 PRJNA1063685 48072 327 13.299213 43.48842651 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 60.2 1.84e-4   NTclustered gi|296005004|ref|XM_002808797.1| 36329 g47529 i0 94.872 5.98165137614679 39 1 12 1 288 325 537 575 Plasmodium falciparum 3D7 conserved protein, unknown function (PF3D7_0813300), partial mRNA blastn 1956 60.2 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
23131927 23131927 PRJNA1063685_S_NODE_43579_length_349_cov_7.992754_g43036_i0 PRJNA1063685 43579 349 7.992754 27.89471146 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 87 3.63e-17   NR XP_011132110.1 110365 g43036 i0 60.6 1.15186246418338 71 27 60.2 1 348 139 452 522 XP_011132110.1 DEAD-box RNA helicase [Gregarina niphandrodes] diamond 402 87 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Gregarinidae Gregarina Gregarina niphandrodes
27793789 27793789 PRJNA1063685_S_NODE_6684_length_690_cov_6.354943_g6201_i0 PRJNA1063685 6684 690 6.354943 43.8491067 Gregarina niphandrodes 110365 SAR_Eukaryotes SAR_Eukaryotes 88.6 7.94e-18   NR XP_011130323.1 110365 g6201 i0 32.4 0.791304347826087 182 115 77 4 44 574 1 179 XP_011130323.1 translationally-controlled tumor-like protein [Gregarina niphandrodes] diamond 546 88.6 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Gregarinidae Gregarina Gregarina niphandrodes
28985498 28985498 PRJNA1063685_S_NODE_12648_length_591_cov_5.733591_g12130_i0 PRJNA1063685 12648 591 5.733591 33.88552281 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 56.6 1.14e-5   NR OEH79838.1 88456 g12130 i0 31.7 2.13197969543147 104 70 52.8 1 5 316 68 170 OEH79838.1 tetratricopeptide repeat-containing protein [Cyclospora cayetanensis] diamond 1260 56.6 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
29679496 29679496 PRJNA1063685_S_NODE_13830_length_576_cov_3.115308_g13307_i0 PRJNA1063685 13830 576 3.115308 17.94417408 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 141 4.48e-37   NR XP_067925660.1 483139 g13307 i0 50.7 2.77604166666667 134 63 69.8 1 1 402 173 303 XP_067925660.1 mc family transporter [Cystoisospora suis] diamond 1599 141 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Cystoisospora Cystoisospora suis
29742754 29742754 PRJNA1063685_S_NODE_63090_length_270_cov_1.746193_g62547_i0 PRJNA1063685 63090 270 1.746193 4.7147211 Cryptosporidium 5806 SAR_Eukaryotes SAR_Eukaryotes 60.1 3.99e-8   NR KAF7457696.1 83540 g62547 i0 38.2 4.73333333333333 89 39 81.1 1 241 23 200 288 KAF7457696.1 putative adenylosuccinate lyase [Cryptosporidium felis] diamond 1278 60.1 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium felis
30312111 30312111 PRJNA1063685_S_NODE_2172_length_886_cov_5.231242_g1831_i0 PRJNA1063685 2172 886 5.231242 46.34880412 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 87 9.31e-16   NR XP_013234438.1 5802 g1831 i0 34.9 2.06884875846501 146 91 48.8 3 419 850 147 290 XP_013234438.1 uncharacterized protein ETH_00030490 [Eimeria tenella] diamond 1833 87 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria tenella
32722368 32722368 PRJNA1063685_S_NODE_69680_length_251_cov_1.028090_g69137_i0 PRJNA1063685 69680 251 1.02809 2.5805059 Neospora caninum Liverpool 572307 SAR_Eukaryotes SAR_Eukaryotes 108 1.58e-25   NR XP_003883876.1 572307 g69137 i0 68.4 0.944223107569721 79 25 94.4 0 249 13 163 241 XP_003883876.1 Asparaginyl-tRNA synthetase, related [Neospora caninum Liverpool] diamond 237 108 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;