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contig_metadata

33 rows where bioproject = "PRJNA1063685", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 33 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 33 ✖

bioproject 1

  • PRJNA1063685 · 33 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4005969 4005969 PRJNA1063685_S_NODE_30044_length_428_cov_6.487324_g29502_i0 PRJNA1063685 30044 428 6.487324 27.76574672 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 143 8.45e-40   NR MEI6871040.1 2026799 g29502 i0 58.5 0.827102803738318 118 49 82.7 0 40 393 1 118 MEI6871040.1 sugar transferase [Verrucomicrobiota bacterium] diamond 354 143 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
5282488 5282488 PRJNA1063685_S_NODE_50605_length_316_cov_5.399177_g50062_i0 PRJNA1063685 50605 316 5.399177 17.06139932 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 429 1.17e-115   NTclustered gi|2874253768|emb|OY969715.1| 412056 g50062 i0 91.961 112.376582278481 311 17 97 7 1 307 914546 914852 MAG: uncultured Verrucomicrobiae bacterium isolate MFD01916.bin.1.1 genome assembly, chromosome: 1 blastn 35511 429 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
5282633 5282633 PRJNA1063685_S_NODE_68125_length_255_cov_1.692308_g67582_i0 PRJNA1063685 68125 255 1.692308 4.3153854 Opitutaceae bacterium TAV5 794903 Bacteria Bacteria 54.7 0.006   NTclustered gi|573471959|gb|CP007053.1| 794903 g67582 i0 96.97 0.129411764705882 33 0 13 1 100 132 603864 603833 Opitutaceae bacterium TAV5, complete genome blastn 33 54.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium TAV5
7832030 7832030 PRJNA1063685_S_NODE_19647_length_513_cov_3.972727_g19109_i0 PRJNA1063685 19647 513 3.972727 20.38008951 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 274 8.49e-86   NR RYD77759.1 2026800 g19109 i0 85.3 0.994152046783626 170 25 99.4 0 3 512 311 480 RYD77759.1 MAG: hypothetical protein EOP84_15150, partial [Verrucomicrobiaceae bacterium] diamond 510 274 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
7832401 7832401 PRJNA1063685_S_NODE_61547_length_275_cov_1.039604_g61004_i0 PRJNA1063685 61547 275 1.039604 2.858911 Opitutaceae bacterium TAV5 794903 Bacteria Bacteria 76.8 1.5e-9   NTclustered gi|573471959|gb|CP007053.1| 794903 g61004 i0 89.831 0.476363636363636 59 6 28 0 1 59 266569 266627 Opitutaceae bacterium TAV5, complete genome blastn 131 76.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium TAV5
12933051 12933051 PRJNA1063685_S_NODE_12231_length_596_cov_9.036329_g11714_i0 PRJNA1063685 12231 596 9.036329 53.85652084 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 245 6.81e-77   NR MFM1943145.1 2026799 g11714 i0 58.9 0.931208053691275 185 74 93.1 1 24 578 201 383 MFM1943145.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 555 245 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
12933508 12933508 PRJNA1063685_S_NODE_5931_length_707_cov_15.383281_g5462_i0 PRJNA1063685 5931 707 15.383281 108.75979667 Terrimicrobium sp. 1965319 Bacteria Bacteria 332 3.779999999999998e-106   NR HEY5768340.1 1965319 g5462 i0 80.8 16.4045261669024 203 39 86.1 0 707 99 536 738 HEY5768340.1 NADP-dependent isocitrate dehydrogenase [Terrimicrobium sp.] diamond 11598 332 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae Terrimicrobium Terrimicrobium sp.
15482548 15482548 PRJNA1063685_S_NODE_5853_length_709_cov_7.553459_g5386_i0 PRJNA1063685 5853 709 7.553459 53.55402431 Pseudomonadati 3379134 Bacteria Bacteria 191 1.86e-54   NR HTS18274.1 2499141 g5386 i0 70 3.40620592383639 130 31 55 1 39 428 1 122 HTS18274.1 Nramp family divalent metal transporter [Verrucomicrobiia bacterium] diamond 2415 191 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
20580527 20580527 PRJNA1063685_S_NODE_25317_length_463_cov_14.205128_g24777_i0 PRJNA1063685 25317 463 14.205128 65.76974264 Prosthecobacter fusiformis 48464 Bacteria Bacteria 676 0   NTclustered gi|12583974|gb|AF245378.1|AF245378 48464 g24777 i0 94.545 235.796976241901 440 21 95 2 1 439 616 179 Prosthecobacter fusiformis 23S ribosomal RNA gene, partial sequence blastn 109174 676 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter fusiformis
21856223 21856223 PRJNA1063685_S_NODE_1558_length_979_cov_11.597130_g1267_i0 PRJNA1063685 1558 979 11.59713 113.5359027 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 1070 0   NTclustered gi|2874254096|emb|OY970179.1| 412056 g1267 i0 87.033 125.020429009193 964 106 98 14 1 957 1728602 1727651 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05521.bin.c.1 genome assembly, chromosome: 1 blastn 122395 1070 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
23131767 23131767 PRJNA1063685_S_NODE_2559_length_849_cov_6.028351_g2191_i0 PRJNA1063685 2559 849 6.028351 51.18069999 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 378 1.04e-126   NR RYD84285.1 2026800 g2191 i0 76.7 0.865724381625442 245 53 85.9 3 731 3 1 243 RYD84285.1 MAG: DEAD/DEAH box helicase [Verrucomicrobiaceae bacterium] diamond 735 378 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
26750187 26750187 PRJNA1063685_S_NODE_1861_length_923_cov_4.980000_g1539_i0 PRJNA1063685 1861 923 4.98 45.9654 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 400 1.81e-138   NR MBS0646142.1 2026799 g1539 i0 91.5 0.692307692307692 213 18 69.2 0 25 663 1 213 MBS0646142.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 639 400 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27383299 27383299 PRJNA1063685_S_NODE_55663_length_296_cov_0.991031_g55120_i0 PRJNA1063685 55663 296 0.991031 2.93345176 Verrucomicrobia bacterium TMED71 1986878 Bacteria Bacteria 46.2 0.00408   NR RPF83200.1 1986878 g55120 i0 33.7 0.871621621621622 86 53 87.2 3 262 5 102 183 RPF83200.1 MAG: sulfatase [Verrucomicrobia bacterium TMED71] diamond 258 46.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobia bacterium TMED71
27793768 27793768 PRJNA1063685_S_NODE_33944_length_403_cov_2.078788_g33402_i0 PRJNA1063685 33944 403 2.078788 8.37751564 Opitutaceae bacterium 2006848 Bacteria Bacteria 156 8.97e-44   NR HXQ80404.1 2006848 g33402 i0 63.3 0.952853598014888 128 44 95.3 2 384 1 1 125 HXQ80404.1 hypothetical protein [Opitutaceae bacterium] diamond 384 156 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
27888265 27888265 PRJNA1063685_S_NODE_3505_length_789_cov_12.483240_g3106_i0 PRJNA1063685 3505 789 12.48324 98.4927636 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 134 8.52e-32   NR RYD77759.1 2026800 g3106 i0 42.1 0.79467680608365 209 104 77.2 6 180 788 7 204 RYD77759.1 MAG: hypothetical protein EOP84_15150, partial [Verrucomicrobiaceae bacterium] diamond 627 134 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
28141239 28141239 PRJNA1063685_S_NODE_7865_length_665_cov_14.194257_g7372_i0 PRJNA1063685 7865 665 14.194257 94.39180905 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 49.3 0.00733   NR MCB1130196.1 2499141 g7372 i0 52.5 0.180451127819549 40 19 18 0 3 122 377 416 MCB1130196.1 ankyrin repeat domain-containing protein [Verrucomicrobiia bacterium] diamond 120 49.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
28638102 28638102 PRJNA1063685_S_NODE_55907_length_295_cov_0.869369_g55364_i0 PRJNA1063685 55907 295 0.869369 2.56463855 Verrucomicrobiota 74201 Bacteria Bacteria 84.3 1.78e-16   NR WP_237705556.1 191863 g55364 i0 50 5.84745762711864 94 45 93.6 1 292 17 2078 2171 WP_237705556.1 autotransporter-associated beta strand repeat-containing protein [Chthoniobacter flavus] diamond 1725 85.1 0.990599294947121 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter flavus
28764090 28764090 PRJNA1063685_S_NODE_11607_length_605_cov_6.890977_g11092_i0 PRJNA1063685 11607 605 6.890977 41.69041085 Pseudomonadati 3379134 Bacteria Bacteria 152 1.2e-40   NR PYJ03943.1 2026799 g11092 i0 46.5 2.41487603305785 157 83 77.9 1 77 547 236 391 PYJ03943.1 MAG: sulfite reductase subunit alpha [Verrucomicrobiota bacterium] diamond 1461 152 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28835559 28835559 PRJNA1063685_S_NODE_28908_length_437_cov_2.068681_g28366_i0 PRJNA1063685 28908 437 2.068681 9.04013597 Opitutaceae bacterium 2006848 Bacteria Bacteria 104 1.95e-24   NR HXQ80403.1 2006848 g28366 i0 59.6 0.610983981693364 89 36 61.1 0 268 2 1 89 HXQ80403.1 hypothetical protein [Opitutaceae bacterium] diamond 267 104 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
29025403 29025403 PRJNA1063685_S_NODE_4288_length_755_cov_21.045455_g3871_i0 PRJNA1063685 4288 755 21.045455 158.89318525 Rubellicoccus peritrichatus 3080537 Bacteria Bacteria 128 1.04e-29   NR WP_317832027.1 3080537 g3871 i0 42.1 0.707284768211921 178 77 69.9 6 642 115 475 628 WP_317832027.1 lipase maturation factor family protein [Rubellicoccus peritrichatus] diamond 534 128 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Cerasicoccaceae Rubellicoccus Rubellicoccus peritrichatus
29403932 29403932 PRJNA1063685_S_NODE_10589_length_620_cov_6.144424_g10074_i0 PRJNA1063685 10589 620 6.144424 38.0954288 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 263 1.5e-84   NR RYD65414.1 2026800 g10074 i0 74.3 0.82741935483871 171 42 82.7 1 619 107 168 336 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 513 263 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
29592971 29592971 PRJNA1063685_S_NODE_48890_length_324_cov_2.509960_g48347_i0 PRJNA1063685 48890 324 2.50996 8.1322704 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 72.4 2.69e-14   NR MEI6871043.1 2026799 g48347 i0 71.1 0.416666666666667 45 13 41.7 0 230 96 1 45 MEI6871043.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 135 72.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29592975 29592975 PRJNA1063685_S_NODE_55050_length_298_cov_1.675556_g54507_i0 PRJNA1063685 55050 298 1.675556 4.99315688 Opitutaceae bacterium 2006848 Bacteria Bacteria 46.6 0.00199   NR MBK8474789.1 2006848 g54507 i0 71.4 0.281879194630872 28 8 28.2 0 215 132 2 29 MBK8474789.1 sigma-70 family RNA polymerase sigma factor [Opitutaceae bacterium] diamond 84 46.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
30161648 30161648 PRJNA1063685_S_NODE_13472_length_580_cov_9.905325_g12951_i0 PRJNA1063685 13472 580 9.905325 57.450885 Phragmitibacter flavus 2576071 Bacteria Bacteria 47.4 0.022   NR WP_138084782.1 2576071 g12951 i0 30.6 0.744827586206897 144 86 70.3 5 487 80 4201 4338 WP_138084782.1 beta strand repeat-containing protein [Phragmitibacter flavus] diamond 432 47.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Phragmitibacter Phragmitibacter flavus
30438231 30438231 PRJNA1063685_S_NODE_19773_length_512_cov_1.656036_g19235_i0 PRJNA1063685 19773 512 1.656036 8.47890432 Pseudomonadati 3379134 Bacteria Bacteria 49.7 0.002   NR MBR2125583.1 1872421 g19235 i0 55.9 0.849609375 34 15 19.9 0 6 107 495 528 MBR2125583.1 SEL1-like repeat protein [Akkermansia sp.] diamond 435 50.1 0.992015968063872 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia sp.
30541017 30541017 PRJNA1063685_S_NODE_5373_length_722_cov_8.972265_g4925_i0 PRJNA1063685 5373 722 8.972265 64.7797533 Verrucomicrobia bacterium LW23 2161867 Bacteria Bacteria 190 2.16e-52   NR PTY06758.1 2161867 g4925 i0 49.8 4.34210526315789 207 97 85.6 3 623 6 450 650 PTY06758.1 hypothetical protein DB346_00395 [Verrucomicrobia bacterium LW23] diamond 3135 190 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobia bacterium LW23
31109598 31109598 PRJNA1063685_S_NODE_33015_length_408_cov_5.958209_g32473_i0 PRJNA1063685 33015 408 5.958209 24.30949272 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 47.8 0.00405   NR MCX6875207.1 2026799 g32473 i0 51.9 1.13235294117647 52 22 37.5 2 44 196 284 333 MCX6875207.1 choice-of-anchor D domain-containing protein [Verrucomicrobiota bacterium] diamond 462 47.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31267807 31267807 PRJNA1063685_S_NODE_17295_length_536_cov_11.853132_g16761_i0 PRJNA1063685 17295 536 11.853132 63.53278752 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 49.3 3.28e-4   NR MCP5521707.1 2026801 g16761 i0 31.3 0.46455223880597 83 56 45.9 1 299 54 20 102 MCP5521707.1 hypothetical protein [Verrucomicrobiales bacterium] diamond 249 49.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
31299404 31299404 PRJNA1063685_S_NODE_52395_length_308_cov_8.553191_g51852_i0 PRJNA1063685 52395 308 8.553191 26.34382828 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 75.9 7.14e-14   NR MDA7675848.1 2562705 g51852 i0 53.8 0.633116883116883 65 30 63.3 0 22 216 210 274 MDA7675848.1 NAD(P)-binding domain-containing protein [Akkermansiaceae bacterium] diamond 195 75.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
31457718 31457718 PRJNA1063685_S_NODE_74436_length_241_cov_1.375000_g73893_i0 PRJNA1063685 74436 241 1.375 3.31375 Opitutaceae bacterium 2006848 Bacteria Bacteria 45.8 0.00292   NR HND62380.1 2006848 g73893 i0 32.9 2.90041493775934 79 53 98.3 0 5 241 314 392 HND62380.1 MFS transporter [Opitutaceae bacterium] diamond 699 45.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
32027017 32027017 PRJNA1063685_S_NODE_378_length_1545_cov_20.881793_g249_i0 PRJNA1063685 378 1545 20.881793 322.62370185 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 60.1 2.79e-7   NR HOS74449.1 2026799 g249 i0 71.4 0.0679611650485437 35 10 6.8 0 11 115 3 37 HOS74449.1 tetratricopeptide repeat protein [Verrucomicrobiota bacterium] diamond 105 60.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32430113 32430113 PRJNA1063685_S_NODE_6759_length_688_cov_8.507317_g6274_i0 PRJNA1063685 6759 688 8.507317 58.53034096 PVC group 1783257 Bacteria Bacteria 75.1 2.04e-12   NR MEI6196367.1 2026799 g6274 i0 43.7 0.867732558139535 103 54 44 3 538 236 76 176 MEI6196367.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 597 75.5 0.994701986754967 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32438543 32438543 PRJNA1063685_S_NODE_20919_length_501_cov_4.373832_g20381_i0 PRJNA1063685 20919 501 4.373832 21.91289832 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 159 2.06e-45   NR MEY4488007.1 2026799 g20381 i0 57.6 3.64071856287425 151 64 90.4 0 16 468 106 256 MEY4488007.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 1824 159 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;