RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1063685", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 6 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA1063685 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12933291 12933291 PRJNA1063685_S_NODE_3331_length_798_cov_18.845517_g2936_i0 PRJNA1063685 3331 798 18.845517 150.38722566 Rhodothermales bacterium 2306054 Bacteria Bacteria 332 2.11e-111   NR HMB89744.1 2306054 g2936 i0 62 1.97744360902256 263 98 98.9 1 1 789 22 282 HMB89744.1 SDR family oxidoreductase [Rhodothermales bacterium] diamond 1578 332 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
16756638 16756638 PRJNA1063685_S_NODE_52014_length_310_cov_4.194093_g51471_i0 PRJNA1063685 52014 310 4.194093 13.0016883 Rhodothermales bacterium 2306054 Bacteria Bacteria 348 3.3e-91   NTclustered gi|2893358395|emb|OZ220686.1| 2306054 g51471 i0 88.316 102.01935483871 291 32 94 2 1 290 1667115 1667404 MAG: Rhodothermales bacterium isolate 312d6c01-350c-491a-87ad-f3958f88b76c genome assembly, chromosome: 1 blastn 31626 348 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
16756776 16756776 PRJNA1063685_S_NODE_74694_length_240_cov_3.257485_g74151_i0 PRJNA1063685 74694 240 3.257485 7.817964 Rhodothermales bacterium 2306054 Bacteria Bacteria 219 2.0099999999999998e-52   NTclustered gi|2621702557|emb|OY760427.1| 2306054 g74151 i0 84.932 186.995833333333 219 30 90 3 25 240 5500783 5501001 MAG: Rhodothermales bacterium isolate 1504ddc0-b432-43e2-af37-a45191a88aeb genome assembly, chromosome: 1 blastn 44879 219 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
18031292 18031292 PRJNA1063685_S_NODE_39675_length_370_cov_2.925926_g39132_i0 PRJNA1063685 39675 370 2.925926 10.8259262 uncultured Rubrivirga sp. 1699421 Bacteria Bacteria 608 1.6599999999999992e-169   NTclustered gi|2795020992|gb|PQ250471.1| 1699421 g39132 i0 98 93.827027027027 350 7 95 0 17 366 67 416 Uncultured Rubrivirga sp. clone OTU616 16S ribosomal RNA gene, partial sequence blastn 34716 608 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga uncultured Rubrivirga sp.
19305230 19305230 PRJNA1063685_S_NODE_29236_length_434_cov_8.362881_g28694_i0 PRJNA1063685 29236 434 8.362881 36.29490354 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 462 1.6299999999999998e-125   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g28694 i0 89.037 408.73732718894 374 39 86 2 28 399 1309431 1309058 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 177392 462 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
27383302 27383302 PRJNA1063685_S_NODE_74123_length_241_cov_5.041667_g73580_i0 PRJNA1063685 74123 241 5.041667 12.15041747 Rhodothermales bacterium 2306054 Bacteria Bacteria 80.5 1.79e-15   NR HMB91192.1 2306054 g73580 i0 54 1.69294605809129 63 28 77.2 1 191 6 160 222 HMB91192.1 serine protease [Rhodothermales bacterium] diamond 408 80.5 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;