RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1063685", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Colwelliibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Colwelliibacteriota · 1 ✖

tax_clade 1

  • Bacteria candidate phyla · 1 ✖

bioproject 1

  • PRJNA1063685 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27785620 27785620 PRJNA1063685_S_NODE_26064_length_458_cov_2.615584_g25523_i0 PRJNA1063685 26064 458 2.615584 11.97937472 root 1 Root_unresolved Root_unresolved 68.6 9.08e-12   NR OGY59307.1 1797691 g25523 i0 53.8 1.34279475982533 52 24 34.1 0 453 298 49 100 OGY59307.1 MAG: hypothetical protein A3I31_02210 [Candidatus Colwellbacteria bacterium RIFCSPLOWO2_02_FULL_44_20b] diamond 615 68.6 1 Bacteria Bacteria candidate phyla   Candidatus Colwelliibacteriota         Candidatus Colwellbacteria bacterium RIFCSPLOWO2_02_FULL_44_20b

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;