RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1063685", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Altimarinota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA1063685 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6557446 6557446 PRJNA1063685_S_NODE_29166_length_435_cov_2.870166_g28624_i0 PRJNA1063685 29166 435 2.870166 12.4852221 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 224 8.41e-54   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g28624 i0 84.127 19.5770114942529 252 18 57 12 57 306 1254156 1254387 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 8516 224 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64
27730779 27730779 PRJNA1063685_S_NODE_19504_length_514_cov_9.011338_g18966_i0 PRJNA1063685 19504 514 9.011338 46.31827732 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 112 3.6e-25   NR MDD3720487.1 2044595 g18966 i0 83.8 0.396887159533074 68 11 39.7 0 334 131 97 164 MDD3720487.1 efflux RND transporter permease subunit [Candidatus Altimarinota bacterium] diamond 204 112 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
31109610 31109610 PRJNA1063685_S_NODE_69675_length_251_cov_1.123596_g69132_i0 PRJNA1063685 69675 251 1.123596 2.82022596 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 70.5 2.95e-12   NR MDF2379530.1 2044595 g69132 i0 37.7 1.7808764940239 77 48 92 0 236 6 80 156 MDF2379530.1 pyrroline-5-carboxylate reductase [Candidatus Altimarinota bacterium] diamond 447 70.5 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;