RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1063685", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1063685 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1454425 1454425 PRJNA1063685_S_NODE_59862_length_280_cov_6.033816_g59319_i0 PRJNA1063685 59862 280 6.033816 16.8946848 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 220 6.68e-53   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g59319 i0 81.55 47.9785714285714 271 46 96 4 12 280 3921 3653 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 13434 220 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
11657985 11657985 PRJNA1063685_S_NODE_21810_length_492_cov_13.360382_g21271_i0 PRJNA1063685 21810 492 13.360382 65.73307944 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 237 1.24e-57   NTclustered gi|300078497|gb|GU001159.1| 200886 g21271 i0 75.922 21.1890243902439 515 94 100 23 1 492 2986 2479 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10425 237 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
17589733 17589733 PRJNA1063685_S_NODE_33834_length_403_cov_7.539394_g33292_i0 PRJNA1063685 33834 403 7.539394 30.38375782 Hartmannellidae 5776 Tubulinea other_Eukaryota 691 0   NTclustered gi|11527309|gb|AF293902.1|AF293902 136464 g33292 i0 98.964 91.4962779156328 386 4 96 0 18 403 835 1220 Saccamoeba limax small subunit ribosomal RNA gene, complete sequence blastn 36873 691 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;