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contig_metadata

28 rows where bioproject = "PRJNA1061474" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 28 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1061474 · 28 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1453657 1453657 PRJNA1061474_P_NODE_53262_length_245_cov_0.895349_g53016_i0 PRJNA1061474 53262 245 0.895349 2.19360505 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 153 6.01e-43   NR MEK7240755.1 2026742 g53016 i0 92.6 1.98367346938776 81 6 99.2 0 245 3 12 92 MEK7240755.1 acyl-CoA dehydrogenase [Gemmatimonadota bacterium] diamond 486 153 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
5281826 5281826 PRJNA1061474_P_NODE_56905_length_242_cov_0.911243_g56659_i0 PRJNA1061474 56905 242 0.911243 2.20520806 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 113 4.130000000000001e-27   NR MDB4882958.1 2026742 g56659 i0 76.3 3.96694214876033 80 19 99.2 0 240 1 566 645 MDB4882958.1 transporter related protein [Gemmatimonadota bacterium] diamond 960 113 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
6556746 6556746 PRJNA1061474_P_NODE_45606_length_251_cov_0.865169_g45360_i0 PRJNA1061474 45606 251 0.865169 2.17157419 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 151 1.27e-40   NR MEK7668895.1 2026742 g45360 i0 85.5 0.99203187250996006 83 12 99.2 0 1 249 580 662 MEK7668895.1 S46 family peptidase [Gemmatimonadota bacterium] diamond 249 151 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
6556842 6556842 PRJNA1061474_P_NODE_49726_length_248_cov_0.880000_g49480_i0 PRJNA1061474 49726 248 0.88 2.1824 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 276 1.22e-69   NTclustered gi|575456455|gb|CP007128.1| 861299 g49480 i0 86.747 59.5040322580645 249 31 100 2 1 248 1828330 1828083 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 14757 276 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
10382223 10382223 PRJNA1061474_P_NODE_51909_length_246_cov_0.890173_g51663_i0 PRJNA1061474 51909 246 0.890173 2.18982558 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 146 8.08e-43   NR HUL02079.1 2448054 g51663 i0 85.4 1 82 12 100 0 246 1 4 85 HUL02079.1 hypothetical protein [Gemmatimonadales bacterium] diamond 246 146 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
11657547 11657547 PRJNA1061474_P_NODE_53590_length_244_cov_0.900585_g53344_i0 PRJNA1061474 53590 244 0.900585 2.1974274 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 135 3.0599999999999995e-37   NR HEY4129559.1 2026741 g53344 i0 82.5 1.9672131147541 80 14 98.4 0 242 3 34 113 HEY4129559.1 type III pantothenate kinase [Gemmatimonadaceae bacterium] diamond 480 135 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
12932703 12932703 PRJNA1061474_P_NODE_54311_length_244_cov_0.900585_g54065_i0 PRJNA1061474 54311 244 0.900585 2.1974274 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 164 6.869999999999999e-48   NR HTO73751.1 2448054 g54065 i0 92.5 0.983606557377049 80 6 98.4 0 3 242 63 142 HTO73751.1 L-threonine 3-dehydrogenase [Gemmatimonadales bacterium] diamond 240 164 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
20580147 20580147 PRJNA1061474_P_NODE_58077_length_241_cov_0.916667_g57831_i0 PRJNA1061474 58077 241 0.916667 2.20916747 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 164 1.8299999999999998e-46   NR HYL28491.1 2448054 g57831 i0 100 3.98340248962656 80 0 99.6 0 2 241 278 357 HYL28491.1 RNA polymerase factor sigma-54 [Gemmatimonadales bacterium] diamond 960 164 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
23131239 23131239 PRJNA1061474_P_NODE_50859_length_247_cov_0.885057_g50613_i0 PRJNA1061474 50859 247 0.885057 2.18609079 Bacteria 2 Bacteria Bacteria 152 2.34e-44   NR PYP45258.1 2026742 g50613 i0 86.4 3.93522267206478 81 11 98.4 0 3 245 142 222 PYP45258.1 MAG: DUF4386 domain-containing protein [Gemmatimonadota bacterium] diamond 972 153 0.993464052287582 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
26623861 26623861 PRJNA1061474_P_NODE_54201_length_244_cov_0.900585_g53955_i0 PRJNA1061474 54201 244 0.900585 2.1974274 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 50.4 7.12e-5   NR MEO8089652.1 2448054 g53955 i0 55.9 1.32786885245902 34 15 41.8 0 122 223 48 81 MEO8089652.1 SGNH/GDSL hydrolase family protein [Gemmatimonadales bacterium] diamond 324 50.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27185119 27185119 PRJNA1061474_P_NODE_54402_length_244_cov_0.900585_g54156_i0 PRJNA1061474 54402 244 0.900585 2.1974274 Bacteria 2 Bacteria Bacteria 99.8 1.06e-23   NR HTE45984.1 2026741 g54156 i0 60 1.9672131147541 80 32 98.4 0 242 3 13 92 HTE45984.1 RNA methyltransferase [Gemmatimonadaceae bacterium] diamond 480 99.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28006642 28006642 PRJNA1061474_P_NODE_55785_length_243_cov_0.900000_g55539_i0 PRJNA1061474 55785 243 0.9 2.187 Bacteria 2 Bacteria Bacteria 55.5 1.2e-6   NR MBT6144206.1 2026742 g55539 i0 41.3 3.60493827160494 63 37 77.8 0 21 209 529 591 MBT6144206.1 tetratricopeptide repeat protein [Gemmatimonadota bacterium] diamond 876 55.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29372374 29372374 PRJNA1061474_P_NODE_47929_length_249_cov_0.875000_g47683_i0 PRJNA1061474 47929 249 0.875 2.17875 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 51.2 4.28e-5   NR MEZ4415337.1 2026742 g47683 i0 52.1 0.578313253012048 48 23 57.8 0 243 100 663 710 MEZ4415337.1 tetratricopeptide repeat protein [Gemmatimonadota bacterium] diamond 144 51.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29687733 29687733 PRJNA1061474_P_NODE_48510_length_249_cov_0.875000_g48264_i0 PRJNA1061474 48510 249 0.875 2.17875 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 116 5.41e-30   NR HXT18237.1 2026741 g48264 i0 71.1 0.91566265060241 76 22 91.6 0 245 18 41 116 HXT18237.1 zf-TFIIB domain-containing protein [Gemmatimonadaceae bacterium] diamond 228 116 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29814265 29814265 PRJNA1061474_P_NODE_56931_length_242_cov_0.899408_g56685_i0 PRJNA1061474 56931 242 0.899408 2.17656736 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 109 4.12e-29   NR MDQ2668390.1 2026742 g56685 i0 65 0.991735537190083 80 28 99.2 0 240 1 11 90 MDQ2668390.1 hypothetical protein [Gemmatimonadota bacterium] diamond 240 109 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30003997 30003997 PRJNA1061474_P_NODE_57891_length_241_cov_0.916667_g57645_i0 PRJNA1061474 57891 241 0.916667 2.20916747 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 122 1.26e-31   NR HKW46957.1 2026741 g57645 i0 81.3 0.995850622406639 80 15 99.6 0 1 240 171 250 HKW46957.1 NAD(P)H-quinone oxidoreductase [Gemmatimonadaceae bacterium] diamond 240 122 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30225018 30225018 PRJNA1061474_P_NODE_46252_length_251_cov_0.865169_g46006_i0 PRJNA1061474 46252 251 0.865169 2.17157419 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 107 1.53e-26   NR HEY4129214.1 2026741 g46006 i0 75.4 0.824701195219124 69 17 82.5 0 250 44 174 242 HEY4129214.1 type II CAAX endopeptidase family protein [Gemmatimonadaceae bacterium] diamond 207 107 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30351996 30351996 PRJNA1061474_P_NODE_51512_length_246_cov_0.890173_g51266_i0 PRJNA1061474 51512 246 0.890173 2.18982558 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 80.5 1.56e-15   NR UCC26554.1 2448054 g51266 i0 65.4 0.634146341463415 52 18 63.4 0 1 156 346 397 UCC26554.1 MAG: hypothetical protein JSU98_05500 [Gemmatimonadales bacterium] diamond 156 80.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30446408 30446408 PRJNA1061474_P_NODE_52893_length_245_cov_0.895349_g52647_i0 PRJNA1061474 52893 245 0.895349 2.19360505 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 110 2.03e-27   NR HEY4129373.1 2026741 g52647 i0 59.3 0.991836734693878 81 32 99.2 1 1 243 178 257 HEY4129373.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 243 110 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31046825 31046825 PRJNA1061474_P_NODE_48475_length_249_cov_0.875000_g48229_i0 PRJNA1061474 48475 249 0.875 2.17875 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 157 8.779999999999999e-43   NR MEO7086950.1 2026741 g48229 i0 87.8 2.96385542168675 82 10 98.8 0 248 3 380 461 MEO7086950.1 alkaline phosphatase D family protein [Gemmatimonadaceae bacterium] diamond 738 157 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31078291 31078291 PRJNA1061474_P_NODE_45455_length_251_cov_0.865169_g45209_i0 PRJNA1061474 45455 251 0.865169 2.17157419 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 60.1 3.03e-8   NR HWP69601.1 2026741 g45209 i0 53.4 0.693227091633466 58 27 69.3 0 174 1 7 64 HWP69601.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 174 60.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31164382 31164382 PRJNA1061474_P_NODE_54495_length_244_cov_0.900585_g54249_i0 PRJNA1061474 54495 244 0.900585 2.1974274 FCB group 1783270 Bacteria Bacteria 125 4.88e-33   NR HKW12561.1 2026741 g54249 i0 73.8 4.91803278688525 80 21 98.4 0 242 3 228 307 HKW12561.1 amidohydrolase family protein [Gemmatimonadaceae bacterium] diamond 1200 126 0.992063492063492 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31584276 31584276 PRJNA1061474_P_NODE_52696_length_245_cov_0.895349_g52450_i0 PRJNA1061474 52696 245 0.895349 2.19360505 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 139 1.6200000000000002e-36   NR HET7249649.1 2448054 g52450 i0 81.5 0.991836734693878 81 15 99.2 0 243 1 64 144 HET7249649.1 1,4-alpha-glucan branching protein domain-containing protein [Gemmatimonadales bacterium] diamond 243 139 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31955286 31955286 PRJNA1061474_P_NODE_55577_length_243_cov_0.905882_g55331_i0 PRJNA1061474 55577 243 0.905882 2.20129326 Bacteria 2 Bacteria Bacteria 117 6.239999999999999e-31   NR HTK49618.1 2026741 g55331 i0 75.3 6.33333333333333 73 18 90.1 0 21 239 57 129 HTK49618.1 dTDP-4-dehydrorhamnose 3,5-epimerase [Gemmatimonadaceae bacterium] diamond 1539 117 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32122073 32122073 PRJNA1061474_P_NODE_54838_length_243_cov_0.905882_g54592_i0 PRJNA1061474 54838 243 0.905882 2.20129326 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 73.6 1.23e-13   NR MEP6779049.1 2026741 g54592 i0 75 0.493827160493827 40 10 49.4 0 243 124 190 229 MEP6779049.1 ArsR family transcriptional regulator [Gemmatimonadaceae bacterium] diamond 120 73.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32312014 32312014 PRJNA1061474_P_NODE_49619_length_248_cov_0.880000_g49373_i0 PRJNA1061474 49619 248 0.88 2.1824 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 103 8.4e-25   NR HXB23448.1 2026741 g49373 i0 83.3 0.653225806451613 54 9 65.3 0 2 163 219 272 HXB23448.1 type II CAAX endopeptidase family protein [Gemmatimonadaceae bacterium] diamond 162 103 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32533425 32533425 PRJNA1061474_P_NODE_47179_length_250_cov_0.870056_g46933_i0 PRJNA1061474 47179 250 0.870056 2.17514 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 96.7 5.73e-22   NR HET6361318.1 2026742 g46933 i0 55.6 0.972 81 36 97.2 0 1 243 57 137 HET6361318.1 class I SAM-dependent methyltransferase [Gemmatimonadota bacterium] diamond 243 96.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32619559 32619559 PRJNA1061474_P_NODE_51440_length_246_cov_0.890173_g51194_i0 PRJNA1061474 51440 246 0.890173 2.18982558 Bacteria 2 Bacteria Bacteria 129 7.35e-33   NR OLD95573.1 1805174 g51194 i0 75.3 19.7560975609756 81 20 98.8 0 244 2 371 451 OLD95573.1 MAG: hypothetical protein AUG79_04980 [Gemmatimonadetes bacterium 13_1_20CM_4_69_16] diamond 4860 129 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadetes bacterium 13_1_20CM_4_69_16

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;