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contig_metadata

8 rows where bioproject = "PRJNA1061474" and tax_clade = "delta/epsilon subdivisions"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 8 ✖

bioproject 1

  • PRJNA1061474 · 8 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
179078 179078 PRJNA1061474_P_NODE_55581_length_243_cov_0.905882_g55335_i0 PRJNA1061474 55581 243 0.905882 2.20129326 uncultured delta proteobacterium 34034 Bacteria Bacteria 228 3.389999999999999e-55   NTclustered gi|2874253999|emb|OY970324.1| 34034 g55335 i0 83.607 1.14814814814815 244 38 100 2 1 243 1576490 1576732 MAG: uncultured delta proteobacterium isolate MFD05502.bin.1.132 genome assembly, chromosome: 1 blastn 279 228 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
12932518 12932518 PRJNA1061474_P_NODE_46691_length_250_cov_0.870056_g46445_i0 PRJNA1061474 46691 250 0.870056 2.17514 uncultured delta proteobacterium 34034 Bacteria Bacteria 198 2.75e-46   NTclustered gi|2874253999|emb|OY970324.1| 34034 g46445 i0 83.256 15.68 215 36 86 0 6 220 2789366 2789152 MAG: uncultured delta proteobacterium isolate MFD05502.bin.1.132 genome assembly, chromosome: 1 blastn 3920 198 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
14207550 14207550 PRJNA1061474_P_NODE_47872_length_249_cov_0.875000_g47626_i0 PRJNA1061474 47872 249 0.875 2.17875 uncultured delta proteobacterium 34034 Bacteria Bacteria 180 9.91e-41   NTclustered gi|2874253999|emb|OY970324.1| 34034 g47626 i0 80.335 4.57429718875502 239 45 96 2 1 238 2280744 2280981 MAG: uncultured delta proteobacterium isolate MFD05502.bin.1.132 genome assembly, chromosome: 1 blastn 1139 180 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
26932326 26932326 PRJNA1061474_P_NODE_46822_length_250_cov_0.870056_g46576_i0 PRJNA1061474 46822 250 0.870056 2.17514 Myxococcota 2818505 Bacteria Bacteria 148 8.559999999999998e-41   NR OGP47982.1 1797823 g46576 i0 87.8 4.92 82 10 98.4 0 3 248 82 163 OGP47982.1 MAG: pyruvate synthase [Deltaproteobacteria bacterium GWD2_55_8] diamond 1230 148 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium GWD2_55_8
27469761 27469761 PRJNA1061474_P_NODE_47423_length_250_cov_0.870056_g47177_i0 PRJNA1061474 47423 250 0.870056 2.17514 Bacteria 2 Bacteria Bacteria 116 3.88e-28   NR OGQ78446.1 1797894 g47177 i0 67.5 1.992 83 25 97.2 1 3 245 73 155 OGQ78446.1 MAG: hypothetical protein A3F90_04875 [Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19] diamond 498 116 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19
28258837 28258837 PRJNA1061474_P_NODE_49286_length_248_cov_0.880000_g49040_i0 PRJNA1061474 49286 248 0.88 2.1824 Thermodesulfobacteriota 200940 Bacteria Bacteria 124 4.53e-33   NR OGP70583.1 1797832 g49040 i0 73.2 2.9758064516129 82 22 99.2 0 1 246 102 183 OGP70583.1 MAG: pyridoxine 5'-phosphate synthase [Deltaproteobacteria bacterium RBG_13_58_19] diamond 738 124 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_13_58_19
30532734 30532734 PRJNA1061474_P_NODE_47973_length_249_cov_0.875000_g47727_i0 PRJNA1061474 47973 249 0.875 2.17875 Myxococcota 2818505 Bacteria Bacteria 89.4 1.56e-18   NR OGQ13796.1 1797850 g47727 i0 75 1.89156626506024 52 13 62.7 0 247 92 647 698 OGQ13796.1 MAG: hypothetical protein A2026_10100 [Deltaproteobacteria bacterium RBG_19FT_COMBO_46_12] diamond 471 90.1 0.992230854605993 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_19FT_COMBO_46_12
31299374 31299374 PRJNA1061474_P_NODE_57235_length_241_cov_0.916667_g56989_i0 PRJNA1061474 57235 241 0.916667 2.20916747 SAR324 cluster bacterium 2024889 Bacteria Bacteria 135 8.35e-36   NR MFI5399532.1 2024889 g56989 i0 83.8 0.995850622406639 80 13 99.6 0 241 2 226 305 MFI5399532.1 diaminopimelate decarboxylase [SAR324 cluster bacterium] diamond 240 135 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;