RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

10 rows where bioproject = "PRJNA1061474" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 10 ✖

bioproject 1

  • PRJNA1061474 · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2729561 2729561 PRJNA1061474_P_NODE_56303_length_242_cov_0.911243_g56057_i0 PRJNA1061474 56303 242 0.911243 2.20520806 Coccomyxa viridis 1274662 Plants Plants 160 9.37e-46   NR CAK0912297.1 1274662 g56057 i0 97.5 3.96694214876033 80 2 99.2 0 240 1 261 340 CAK0912297.1 tufA [Coccomyxa viridis] diamond 960 160 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis
7389431 7389431 PRJNA1061474_P_NODE_54466_length_244_cov_0.900585_g54220_i0 PRJNA1061474 54466 244 0.900585 2.1974274 Desmochloris 138596 Plants Plants 322 1.52e-83   NTclustered gi|313476264|emb|FM882217.1| 578869 g54220 i0 98.37 75.0573770491803 184 1 75 2 15 198 344 163 Desmochloris sp. TP-2008 partial 18S rRNA gene, ITS1, 5.8S rRNA and ITS2, strain CCAP 6006/2 blastn 18314 322 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris mollenhaueri
7830696 7830696 PRJNA1061474_P_NODE_24087_length_391_cov_0.814465_g23841_i0 PRJNA1061474 24087 391 0.814465 3.18455815 Eukaryota 2759 Plants Plants 171 1.5899999999999999e-46   NR PRW32884.1 3076 g23841 i0 82.1 20.7928388746803 106 19 81.3 0 5 322 20 125 PRW32884.1 Histone H2A [Chlorella sorokiniana] diamond 8130 172 0.994186046511628 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
17589500 17589500 PRJNA1061474_P_NODE_49834_length_247_cov_1.591954_g49588_i0 PRJNA1061474 49834 247 1.591954 3.93212638 Chlorophyta 3041 Plants Plants 396 8.95e-106   NTclustered gi|45385169|gb|AY553213.1| 3075 g49588 i0 95.547 100.004048582996 247 11 100 0 1 247 862 1108 Auxenochlorella protothecoides 16S small subunit ribosomal RNA gene, partial sequence; chloroplast blastn 24701 396 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
27541132 27541132 PRJNA1061474_P_NODE_33344_length_317_cov_1.737705_g33098_i0 PRJNA1061474 33344 317 1.737705 5.50852485 Chlamydomonas eustigma 1157962 Plants Plants 192 3.8899999999999994e-57   NR GAX78472.1 1157962 g33098 i0 88.6 0.993690851735016 105 12 99.4 0 315 1 351 455 GAX78472.1 hypothetical protein CEUSTIGMA_g5911.t1 [Chlamydomonas eustigma] diamond 315 192 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas eustigma
28606274 28606274 PRJNA1061474_P_NODE_56707_length_242_cov_0.911243_g56461_i0 PRJNA1061474 56707 242 0.911243 2.20520806 root 1 Root_unresolved Root_unresolved 53.1 7.98e-6   NR GIL51318.1 51714 g56461 i0 50 2.98760330578512 52 26 64.5 0 215 60 124 175 GIL51318.1 hypothetical protein Vafri_7335 [Volvox africanus] diamond 723 53.5 0.992523364485981 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox africanus
29624416 29624416 PRJNA1061474_P_NODE_35830_length_303_cov_0.982609_g35584_i0 PRJNA1061474 35830 303 0.982609 2.97730527 Chlorella desiccata (nom. nud.) 1650286 Plants Plants 60.8 7.63e-9   NR KAG7666851.1 1650286 g35584 i0 53.2 2.6039603960396 62 28 61.4 1 118 303 34 94 KAG7666851.1 hypothetical protein KSW81_000618 [Chlorella desiccata (nom. nud.)] diamond 789 60.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris sp. 'desiccata'
30003981 30003981 PRJNA1061474_P_NODE_32371_length_324_cov_0.804781_g32125_i0 PRJNA1061474 32371 324 0.804781 2.60749044 Scenedesmus sp. NREL 46B-D3 2650976 Plants Plants 49.3 2.65e-4   NR KAF6259220.1 2650976 g32125 i0 39.5 0.703703703703704 76 38 66.7 2 109 324 11 82 KAF6259220.1 plastid lipid-associated protein/fibrillin conserved domain-containing protein [Scenedesmus sp. NREL 46B-D3] diamond 228 49.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus sp. NREL 46B-D3
31227725 31227725 PRJNA1061474_P_NODE_27935_length_355_cov_1.702128_g27689_i0 PRJNA1061474 27935 355 1.702128 6.0425544 root 1 Root_unresolved Root_unresolved 91.3 1.32e-18   NR WIA21344.1 3088 g27689 i0 64.6 2.67887323943662 65 23 54.9 0 7 201 597 661 WIA21344.1 hypothetical protein OEZ85_000570 [Tetradesmus obliquus] diamond 951 91.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
31931905 31931905 PRJNA1061474_P_NODE_21097_length_424_cov_1.316239_g20851_i0 PRJNA1061474 21097 424 1.316239 5.58085336 Pedinophyceae sp. YPF-7 765719 Plants Plants 100 2.1699999999999994e-24   NR CAG9460866.1 765719 g20851 i0 47.3 0.92688679245283 131 53 92.7 1 401 9 8 122 CAG9460866.1 unnamed protein product [Pedinophyceae sp. YPF-701] diamond 393 100 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae       Pedinophyceae sp. YPF-701

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;