RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1061474", tax_clade = "Opisthokonta" and tax_phylum = "Mollusca"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 4 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 4 ✖

bioproject 1

  • PRJNA1061474 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29079986 29079986 PRJNA1061474_P_NODE_41308_length_272_cov_2.145729_g41062_i0 PRJNA1061474 41308 272 2.145729 5.83638288 Metazoa 33208 Mollusca Mollusca 184 6.13e-57   NR Q05974.1 6523 g41062 i0 100 226.246323529412 90 0 99.3 0 270 1 27 116 Q05974.1 RecName: Full=Ras-related protein Rab-1A [Lymnaea stagnalis] diamond 61539 184 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis
29206427 29206427 PRJNA1061474_P_NODE_33849_length_314_cov_1.597510_g33603_i0 PRJNA1061474 33849 314 1.59751 5.0161814 Metazoa 33208 Mollusca Mollusca 58.2 1.86e-7   NR XP_046344173.1 6454 g33603 i0 100 53.6178343949045 26 0 24.8 0 2 79 165 190 XP_046344173.1 splicing factor U2AF 35 kDa subunit-like isoform X1 [Haliotis rufescens] diamond 16836 58.2 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis rufescens
30090284 30090284 PRJNA1061474_P_NODE_57772_length_241_cov_0.916667_g57526_i0 PRJNA1061474 57772 241 0.916667 2.20916747 Metazoa 33208 Mollusca Mollusca 90.1 3.4300000000000004e-21   NR CAI9728599.1 6645 g57526 i0 95.5 36.6846473029046 44 2 54.8 0 239 108 74 117 CAI9728599.1 mago nashi homolog 2 isoform X2 [Octopus vulgaris] diamond 8841 90.9 0.991199119911991 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda Octopoda Octopodidae Octopus Octopus vulgaris
30848729 30848729 PRJNA1061474_P_NODE_29474_length_343_cov_2.318519_g29228_i0 PRJNA1061474 29474 343 2.318519 7.95252017 Metazoa 33208 Mollusca Mollusca 132 1.24e-37   NR WAQ99731.1 6604 g29228 i0 100 64.5743440233236 56 0 49 0 233 66 39 94 WAQ99731.1 RBX1-like protein [Mya arenaria] diamond 22149 132 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Myidae Mya Mya arenaria

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;