RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1061474", tax_clade = "FCB group" and tax_phylum = "Candidatus Latescibacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Latescibacterota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1061474 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2729464 2729464 PRJNA1061474_P_NODE_52143_length_246_cov_0.867052_g51897_i0 PRJNA1061474 52143 246 0.867052 2.13294792 Candidatus Latescibacterota bacterium 2053570 Bacteria Bacteria 235 2.06e-57   NTclustered gi|2108033339|gb|CP070763.1| 2053570 g51897 i0 84.583 1.92682926829268 240 33 97 3 6 243 1701259 1701022 MAG: Candidatus Latescibacterota bacterium isolate bin260 chromosome blastn 474 235 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium
4005318 4005318 PRJNA1061474_P_NODE_47744_length_249_cov_0.875000_g47498_i0 PRJNA1061474 47744 249 0.875 2.17875 Pseudomonadati 3379134 Bacteria Bacteria 113 5.44e-28   NR MCC7263730.1 2053570 g47498 i0 67.1 1.97590361445783 82 25 98.8 1 3 248 121 200 MCC7263730.1 glycosyltransferase family 1 protein [Candidatus Latescibacterota bacterium] diamond 492 113 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium
9106613 9106613 PRJNA1061474_P_NODE_55448_length_243_cov_0.905882_g55202_i0 PRJNA1061474 55448 243 0.905882 2.20129326 Candidatus Latescibacterota bacterium 2053570 Bacteria Bacteria 54.7 0.006   NTclustered gi|2893358399|emb|OZ220690.1| 2053570 g55202 i0 100 0.584362139917695 29 0 12 0 165 193 2167396 2167424 MAG: Candidatus Latescibacterota bacterium isolate 4544edd8-ea3d-4877-aa30-594cc490bc13 genome assembly, chromosome: 1 blastn 142 54.7 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;