RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1059246" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA1059246 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2727506 2727506 PRJNA1059246_P_NODE_31943_length_385_cov_1.455128_g31317_i0 PRJNA1059246 31943 385 1.455128 5.6022428 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 302 3.3e-77   NTclustered gi|421976355|gb|JQ519494.1| 5778 g31317 i0 92.788 87.9454545454546 208 15 54 0 178 385 794 587 Vermamoeba vermiformis clone JG10.150_g4 elongation factor 2 alpha gene, partial cds blastn 33859 302 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
4003580 4003580 PRJNA1059246_P_NODE_45304_length_311_cov_0.882353_g44678_i0 PRJNA1059246 45304 311 0.882353 2.74411783 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 525 1.42e-144   NTclustered gi|62910949|gb|AY925001.1| 5778 g44678 i0 97.106 2.27331189710611 311 9 100 0 1 311 641 331 Hartmannella vermiformis Rpl7A mRNA, partial cds blastn 707 525 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
7829787 7829787 PRJNA1059246_P_NODE_49007_length_293_cov_1.272727_g48381_i0 PRJNA1059246 49007 293 1.272727 3.72909011 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 464 2.9399999999999994e-126   NTclustered gi|421976355|gb|JQ519494.1| 5778 g48381 i0 95.517 0.989761092150171 290 13 99 0 2 291 599 310 Vermamoeba vermiformis clone JG10.150_g4 elongation factor 2 alpha gene, partial cds blastn 290 464 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
12490408 12490408 PRJNA1059246_P_NODE_47670_length_299_cov_2.044248_g47044_i0 PRJNA1059246 47670 299 2.044248 6.11230152 Vermamoeba 1260114 Tubulinea other_Eukaryota 547 2.9099999999999987e-151   NTclustered gi|909719645|gb|KT185625.1| 5778 g47044 i0 99.666 49.2775919732441 299 1 100 0 1 299 5552 5254 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 14734 547 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
15480064 15480064 PRJNA1059246_P_NODE_53693_length_278_cov_1.126829_g53067_i0 PRJNA1059246 53693 278 1.126829 3.13258462 Amoeba proteus 5775 Tubulinea other_Eukaryota 168 1.53e-48   NR AAP88974.1 5775 g53067 i0 82.6 0.992805755395683 92 16 99.3 0 3 278 36 127 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 276 168 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
18863122 18863122 PRJNA1059246_P_NODE_69855_length_243_cov_1.670588_g69229_i0 PRJNA1059246 69855 243 1.670588 4.05952884 Vermamoeba 1260114 Tubulinea other_Eukaryota 449 6.65e-122   NTclustered gi|2806326577|gb|PQ345827.1| 5778 g69229 i0 100 100 243 0 100 0 1 243 379 137 Vermamoeba vermiformis isolate 8FSa small subunit ribosomal RNA gene, partial sequence blastn 24300 449 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
31164358 31164358 PRJNA1059246_P_NODE_40455_length_334_cov_1.873563_g39829_i0 PRJNA1059246 40455 334 1.873563 6.25770042 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 149 1.4099999999999996e-43   NR AFX73066.1 5778 g39829 i0 69.4 22.9311377245509 111 34 99.7 0 334 2 29 139 AFX73066.1 14-3-3 protein, partial [Vermamoeba vermiformis] diamond 7659 149 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;