RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1059246" and tax_phylum = "Thermoproteota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoproteota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1059246 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27414980 27414980 PRJNA1059246_P_NODE_70843_length_242_cov_1.786982_g70217_i0 PRJNA1059246 70843 242 1.786982 4.32449644 Sulfolobales archaeon 2268200 Archaea Archaea 42.4 0.0446   NR MEZ0289804.1 2268200 g70217 i0 38.6 0.545454545454545 44 27 54.5 0 111 242 183 226 MEZ0289804.1 phosphoribosyltransferase [Sulfolobales archaeon] diamond 132 42.4 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales     Sulfolobales archaeon
27856620 27856620 PRJNA1059246_P_NODE_46045_length_307_cov_1.581197_g45419_i0 PRJNA1059246 46045 307 1.581197 4.85427479 Zestosphaera sp. 2303494 Archaea Archaea 57 1.51e-8   NR MFN3268368.1 2303494 g45419 i0 92.6 0.263843648208469 27 2 26.4 0 131 211 1 27 MFN3268368.1 hypothetical protein [Zestosphaera sp.] diamond 81 57 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Zestosphaera Zestosphaera sp.
32839846 32839846 PRJNA1059246_P_NODE_65720_length_247_cov_1.327586_g65094_i0 PRJNA1059246 65720 247 1.327586 3.27913742 root 1 Root_unresolved Root_unresolved 67.4 7.72e-11   NR MEM4762355.1 1961369 g65094 i0 43.5 1.36032388663968 69 36 83.8 1 242 36 298 363 MEM4762355.1 hydroxylamine reductase [Thermofilum sp.] diamond 336 67.8 0.994100294985251 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermofilales Thermofilaceae Thermofilum Thermofilum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;