RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJNA1059246" and tax_phylum = "Perkinsozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA1059246 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6555253 6555253 PRJNA1059246_P_NODE_59586_length_258_cov_1.248649_g58960_i0 PRJNA1059246 59586 258 1.248649 3.22151442 Perkinsus olseni 32597 SAR_Eukaryotes SAR_Eukaryotes 183 7.98e-42   NTclustered gi|1027589964|gb|KR704816.1| 32597 g58960 i0 81.034 46.4883720930233 232 42 90 2 6 236 831 1061 Perkinsus olseni Isocitrate dehydrogenase (IDH) mRNA, complete cds blastn 11994 183 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
14205533 14205533 PRJNA1059246_P_NODE_22352_length_477_cov_2.888614_g21730_i0 PRJNA1059246 22352 477 2.888614 13.77868878 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 63.2 2.13e-8   NR XP_002778973.1 423536 g21730 i0 38.8 1.93081761006289 103 58 61.6 3 37 330 12 114 XP_002778973.1 46 kDa FK506-binding nuclear protein, putative [Perkinsus marinus ATCC 50983] diamond 921 63.2 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
15479502 15479502 PRJNA1059246_P_NODE_10313_length_750_cov_1.189069_g9765_i0 PRJNA1059246 10313 750 1.189069 8.9180175 Perkinsus olseni 32597 SAR_Eukaryotes SAR_Eukaryotes 240 1.27e-76   NR KAF4686610.1 32597 g9765 i0 60.6 0.752 188 73 74.8 1 32 592 3 190 KAF4686610.1 hypothetical protein FOZ60_005038 [Perkinsus olseni] diamond 564 240 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
26655256 26655256 PRJNA1059246_P_NODE_59181_length_259_cov_1.655914_g58555_i0 PRJNA1059246 59181 259 1.655914 4.28881726 Perkinsus olseni 32597 SAR_Eukaryotes SAR_Eukaryotes 119 8.929999999999999e-31   NR KAF4704039.1 32597 g58555 i0 66.3 3.98455598455598 86 29 99.6 0 258 1 132 217 KAF4704039.1 Spliceosome RNA helicase ddx39b, partial [Perkinsus olseni] diamond 1032 119 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
26750117 26750117 PRJNA1059246_P_NODE_63941_length_249_cov_0.875000_g63315_i0 PRJNA1059246 63941 249 0.875 2.17875 Perkinsus chesapeaki 330153 SAR_Eukaryotes SAR_Eukaryotes 70.5 7.24e-12   NR KAF4665292.1 330153 g63315 i0 41.8 0.807228915662651 67 39 80.7 0 216 16 3387 3453 KAF4665292.1 putative ATP-dependent RNA helicase ddx60 [Perkinsus chesapeaki] diamond 201 70.5 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus chesapeaki
28258825 28258825 PRJNA1059246_P_NODE_56326_length_269_cov_1.571429_g55700_i0 PRJNA1059246 56326 269 1.571429 4.22714401 Dinophyceae 2864 SAR_Eukaryotes SAR_Eukaryotes 102 7.26e-23   NR KAF4675784.1 32597 g55700 i0 56.1 4.5724907063197 82 36 91.4 0 23 268 9 90 KAF4675784.1 Cytoplasmic dynein 1 intermediate chain 2 [Perkinsus olseni] diamond 1230 103 0.990291262135922 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
29656010 29656010 PRJNA1059246_P_NODE_61290_length_251_cov_1.882022_g60664_i0 PRJNA1059246 61290 251 1.882022 4.72387522 Perkinsus chesapeaki 330153 SAR_Eukaryotes SAR_Eukaryotes 50.1 1.03e-4   NR KAF4665930.1 330153 g60664 i0 41.9 2.50996015936255 74 36 81.3 4 235 32 262 334 KAF4665930.1 hypothetical protein FOL47_004349 [Perkinsus chesapeaki] diamond 630 50.1 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus chesapeaki
29814207 29814207 PRJNA1059246_P_NODE_62711_length_250_cov_0.870056_g62085_i0 PRJNA1059246 62711 250 0.870056 2.17514 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 73.6 1.09e-14   NR XP_002764574.1 423536 g62085 i0 43.6 0.936 78 44 93.6 0 248 15 11 88 XP_002764574.1 abc transporter, putative [Perkinsus marinus ATCC 50983] diamond 234 73.6 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
31638943 31638943 PRJNA1059246_P_NODE_62136_length_251_cov_0.865169_g61510_i0 PRJNA1059246 62136 251 0.865169 2.17157419 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 56.6 2.86e-8   NR KAF4755265.1 32597 g61510 i0 44.8 6.27490039840637 67 37 80.1 0 9 209 19 85 KAF4755265.1 Prefoldin subunit 4, partial [Perkinsus olseni] diamond 1575 56.6 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
32461746 32461746 PRJNA1059246_P_NODE_59179_length_259_cov_1.655914_g58553_i0 PRJNA1059246 59179 259 1.655914 4.28881726 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 82.4 4.79e-16   NR KAF4650494.1 32597 g58553 i0 47.1 15.3359073359073 85 45 98.5 0 1 255 197 281 KAF4650494.1 Alpha-centractin, partial [Perkinsus olseni] diamond 3972 82.8 0.995169082125604 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
32902847 32902847 PRJNA1059246_P_NODE_51840_length_284_cov_0.829384_g51214_i0 PRJNA1059246 51840 284 0.829384 2.35545056 Perkinsus 28000 SAR_Eukaryotes SAR_Eukaryotes 56.6 7.75e-7   NR KAF4710660.1 32597 g51214 i0 43.1 4.56338028169014 72 36 73.9 2 212 3 68 136 KAF4710660.1 hypothetical protein FOZ63_014795, partial [Perkinsus olseni] diamond 1296 56.6 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;