RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1059246" and tax_phylum = "Nitrospinota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospinota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1059246 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28519835 28519835 PRJNA1059246_P_NODE_18687_length_531_cov_1.082969_g18070_i0 PRJNA1059246 18687 531 1.082969 5.75056539 Nitrospinota bacterium 2026769 Bacteria Bacteria 78.2 3.51e-13   NR MDH4184556.1 2026769 g18070 i0 38.9 1.50847457627119 113 68 63.3 1 338 3 44 156 MDH4184556.1 tetratricopeptide repeat protein [Nitrospinota bacterium] diamond 801 78.2 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
31140844 31140844 PRJNA1059246_P_NODE_43855_length_317_cov_1.750000_g43229_i0 PRJNA1059246 43855 317 1.75 5.5475 Nitrospinae bacterium RIFCSPLOWO2_ 1801683 Bacteria Bacteria 51.6 5.75e-5   NR OGW00599.1 1801683 g43229 i0 29.1 1.61829652996845 86 54 76.7 3 14 256 160 243 OGW00599.1 MAG: hypothetical protein A2889_04190 [Nitrospinae bacterium RIFCSPLOWO2_01_FULL_39_10] diamond 513 51.6 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinae bacterium RIFCSPLOWO2_01_FULL_39_10

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;