RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1059246" and tax_phylum = "Foraminifera"

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tax_superkingdom 1

tax_phylum 1

  • Foraminifera · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA1059246 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26900758 26900758 PRJNA1059246_P_NODE_65961_length_247_cov_0.885057_g65335_i0 PRJNA1059246 65961 247 0.885057 2.18609079 root 1 Root_unresolved Root_unresolved 129 7.12e-34   NR ETO12872.1 46433 g65335 i0 71.3 4.90688259109312 80 23 97.2 0 241 2 41 120 ETO12872.1 hypothetical protein RFI_24503 [Reticulomyxa filosa] diamond 1212 130 0.992307692307692 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
27762269 27762269 PRJNA1059246_P_NODE_72324_length_241_cov_0.916667_g71698_i0 PRJNA1059246 72324 241 0.916667 2.20916747 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 67.8 5.38e-11   NR ETO33002.1 46433 g71698 i0 46.2 0.970954356846473 78 42 97.1 0 6 239 1027 1104 ETO33002.1 Dynein heavy chain family protein [Reticulomyxa filosa] diamond 234 67.8 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
28353690 28353690 PRJNA1059246_P_NODE_62126_length_251_cov_0.865169_g61500_i0 PRJNA1059246 62126 251 0.865169 2.17157419 root 1 Root_unresolved Root_unresolved 79 3.62e-15   NR ETO27140.1 46433 g61500 i0 49.4 6.94422310756972 83 36 99.2 2 251 3 121 197 ETO27140.1 hypothetical protein RFI_09992 [Reticulomyxa filosa] diamond 1743 79.7 0.991217063989962 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
30446345 30446345 PRJNA1059246_P_NODE_60533_length_254_cov_1.701657_g59907_i0 PRJNA1059246 60533 254 1.701657 4.32220878 Reticulomyxa filosa 46433 SAR_Eukaryotes SAR_Eukaryotes 47 0.00135   NR ETO33887.1 46433 g59907 i0 38 0.838582677165354 71 42 83.9 1 248 36 447 515 ETO33887.1 hypothetical protein RFI_03209, partial [Reticulomyxa filosa] diamond 213 47 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa
31101321 31101321 PRJNA1059246_P_NODE_32995_length_378_cov_1.226230_g32369_i0 PRJNA1059246 32995 378 1.22623 4.6351494 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 60.5 1.08e-7   NR ETO37054.1 46433 g32369 i0 33.6 2 128 68 96.8 4 11 376 827 943 ETO37054.1 hypothetical protein RFI_00007 [Reticulomyxa filosa] diamond 756 60.5 1 Eukaryota Sar   Foraminifera     Reticulomyxidae Reticulomyxa Reticulomyxa filosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;