RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1059246" and tax_phylum = "Artverviricota"

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tax_superkingdom 1

tax_phylum 1

  • Artverviricota · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1059246 · 1 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11655555 11655555 PRJNA1059246_P_NODE_35410_length_362_cov_2.698962_g34784_i0 PRJNA1059246 35410 362 2.698962 9.77024244 Lentivirus humimdef1 3418650 Viruses Viruses 54.7 0.01   NTclustered gi|350528762|gb|JN681222.1| 11676 g34784 i0 96.875 0.704419889502762 32 1 9 0 34 65 396 427 HIV-1 isolate CA457_H1_1C from South Africa envelope glycoprotein (env) gene, complete cds; vpu protein (vpu) and rev protein (rev) genes, partial cds; and nonfunctional tat protein (tat) gene, partial sequence blastn 255 54.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;