RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA1059246", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 6 ✖

tax_kingdom 1

  • Bacillati · 6 ✖

bioproject 1

  • PRJNA1059246 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1011417 1011417 PRJNA1059246_P_NODE_18921_length_527_cov_1.262115_g18303_i0 PRJNA1059246 18921 527 1.262115 6.65134605 Metamycoplasmataceae 2895623 Bacteria Bacteria 54.7 0.014   NTclustered gi|1563788636|emb|LR214955.1| 2115 g18303 i0 94.286 0.332068311195446 35 2 7 0 9 43 302911 302877 Mycoplasma fermentans strain NCTC10117 genome assembly, chromosome: 1 blastn 175 54.7 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis fermentans
17589392 17589392 PRJNA1059246_P_NODE_7274_length_909_cov_1.660287_g6786_i0 PRJNA1059246 7274 909 1.660287 15.09200883 Mycoplasmoides 2995234 Bacteria Bacteria 67.6 3.28e-6   NTclustered gi|1190813395|gb|CP017340.1| 2104 g6786 i0 100 3.98459845984598 36 0 4 0 583 618 809799 809764 Mycoplasmoides pneumoniae strain RI3 chromosome, complete genome blastn 3622 67.6 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Mycoplasmoides Mycoplasmoides pneumoniae
27635855 27635855 PRJNA1059246_P_NODE_70824_length_242_cov_1.822485_g70198_i0 PRJNA1059246 70824 242 1.822485 4.4104137 Malacoplasma muris 2119 Bacteria Bacteria 59.7 3.78e-8   NR WP_412032002.1 2119 g70198 i0 44 0.929752066115702 75 42 93 0 227 3 1 75 WP_412032002.1 glycine--tRNA ligase [Malacoplasma muris] diamond 225 59.7 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Malacoplasma Malacoplasma muris
28551491 28551491 PRJNA1059246_P_NODE_44367_length_315_cov_1.210744_g43741_i0 PRJNA1059246 44367 315 1.210744 3.8138435999999998 Mycoplasmataceae bacterium 2685873 Bacteria Bacteria 56.6 1.1e-6   NR MDK2819939.1 2685873 g43741 i0 40.8 1.37142857142857 71 38 67.6 2 233 21 32 98 MDK2819939.1 DUF262 domain-containing protein [Mycoplasmataceae bacterium] diamond 432 56.6 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae   Mycoplasmataceae bacterium
28583092 28583092 PRJNA1059246_P_NODE_72747_length_240_cov_2.293413_g72121_i0 PRJNA1059246 72747 240 2.293413 5.5041912 Candidatus Ureaplasma intestinipullorum 2838770 Bacteria Bacteria 62 4.88e-9   NR MBU3830691.1 2838770 g72121 i0 45.3 0.8 64 35 80 0 46 237 14 77 MBU3830691.1 ABC transporter permease [Candidatus Ureaplasma intestinipullorum] diamond 192 62 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Ureaplasma Candidatus Ureaplasma intestinipullorum
30216713 30216713 PRJNA1059246_P_NODE_68132_length_245_cov_0.895349_g67506_i0 PRJNA1059246 68132 245 0.895349 2.19360505 root 1 Root_unresolved Root_unresolved 94 2.81e-22   NR WP_201773784.1 2144 g67506 i0 53.2 2.79183673469388 77 36 94.3 0 6 236 5 81 WP_201773784.1 aldo/keto reductase [Spiroplasma mirum] diamond 684 94 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma mirum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;