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contig_metadata

10 rows where bioproject = "PRJNA1059246" and tax_clade = "delta/epsilon subdivisions"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 10 ✖

bioproject 1

  • PRJNA1059246 · 10 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1011533 1011533 PRJNA1059246_P_NODE_47941_length_298_cov_1.368889_g47315_i0 PRJNA1059246 47941 298 1.368889 4.07928922 Bacteria 2 Bacteria Bacteria 518 2.2699999999999998e-142   NTclustered gi|451917473|gb|KC451337.1| 34034 g47315 i0 97.987 99.6040268456376 298 6 100 0 1 298 15 312 Uncultured delta proteobacterium clone RLBp4165 16S ribosomal RNA gene, partial sequence blastn 29682 518 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
5279897 5279897 PRJNA1059246_P_NODE_45005_length_312_cov_1.288703_g44379_i0 PRJNA1059246 45005 312 1.288703 4.02075336 uncultured delta proteobacterium 34034 Bacteria Bacteria 52.8 0.029   NTclustered gi|2874253659|emb|OY969087.1| 34034 g44379 i0 96.774 0.0993589743589744 31 1 10 0 258 288 5319863 5319893 MAG: uncultured delta proteobacterium isolate MFD01721.bin.c.1 genome assembly, chromosome: 1 blastn 31 52.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
19302440 19302440 PRJNA1059246_P_NODE_13216_length_650_cov_2.155979_g12632_i0 PRJNA1059246 13216 650 2.155979 14.0138635 Actinomycetota 201174 Bacteria Bacteria 77 8.07e-15   NR MBF0288354.1 2024889 g12632 i0 54.7 2.24769230769231 64 29 29.5 0 83 274 1 64 MBF0288354.1 cold shock domain-containing protein [SAR324 cluster bacterium] diamond 1461 77.4 0.994832041343669 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
20578413 20578413 PRJNA1059246_P_NODE_63257_length_250_cov_0.870056_g62631_i0 PRJNA1059246 63257 250 0.870056 2.17514 Persicimonas caeni 2292766 Bacteria Bacteria 67.8 4.95e-11   NR WP_141196655.1 2292766 g62631 i0 60 2.016 50 20 60 0 100 249 13 62 WP_141196655.1 quinolinate synthase NadA [Persicimonas caeni] diamond 504 67.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas caeni
27880091 27880091 PRJNA1059246_P_NODE_48145_length_297_cov_1.375000_g47519_i0 PRJNA1059246 48145 297 1.375 4.08375 Pseudomonadota 1224 Bacteria Bacteria 209 1.04e-67   NR WP_220096280.1 1765737 g47519 i0 100 1.97979797979798 98 0 99 0 295 2 33 130 WP_220096280.1 zonular occludens toxin domain-containing protein, partial [Dissulfurirhabdus thermomarina] diamond 588 209 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria   Dissulfurirhabdaceae Dissulfurirhabdus Dissulfurirhabdus thermomarina
27974808 27974808 PRJNA1059246_P_NODE_60765_length_253_cov_1.711111_g60139_i0 PRJNA1059246 60765 253 1.711111 4.32911083 root 1 Root_unresolved Root_unresolved 44.3 0.0123   NR OGP75284.1 1797832 g60139 i0 32.7 1.64822134387352 55 37 65.2 0 61 225 797 851 OGP75284.1 MAG: hypothetical protein A2Y80_04575 [Deltaproteobacteria bacterium RBG_13_58_19] diamond 417 44.7 0.991051454138702 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_13_58_19
28448622 28448622 PRJNA1059246_P_NODE_36606_length_355_cov_1.762411_g35980_i0 PRJNA1059246 36606 355 1.762411 6.25655905 Myxococcota 2818505 Bacteria Bacteria 55.1 6.55e-6   NR PKN53796.1 2013741 g35980 i0 33.3 1.72394366197183 99 55 79.4 4 31 312 760 852 PKN53796.1 MAG: hypothetical protein CVU56_29970 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14] diamond 612 55.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14
30698836 30698836 PRJNA1059246_P_NODE_52434_length_282_cov_1.162679_g51808_i0 PRJNA1059246 52434 282 1.162679 3.27875478 Deltaproteobacteria bacterium ADurb.Bin2 2026735 Bacteria Bacteria 45.4 0.00272   NR OQB13206.1 1852869 g51808 i0 41.7 1.02127659574468 96 48 95.7 3 6 275 35 128 OQB13206.1 MAG: Inner membrane protein YphA [Deltaproteobacteria bacterium ADurb.Bin207] diamond 288 45.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium ADurb.Bin207
31552635 31552635 PRJNA1059246_P_NODE_68976_length_244_cov_1.035088_g68350_i0 PRJNA1059246 68976 244 1.035088 2.52561472 Bradymonas sediminis 1548548 Bacteria Bacteria 43.5 0.0198   NR WP_111331830.1 1548548 g68350 i0 51.4 0.430327868852459 35 17 43 0 231 127 294 328 WP_111331830.1 hypothetical protein [Bradymonas sediminis] diamond 105 43.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Bradymonas Bradymonas sediminis
32816619 32816619 PRJNA1059246_P_NODE_52660_length_281_cov_1.399038_g52034_i0 PRJNA1059246 52660 281 1.399038 3.93129678 Lujinxingiaceae bacterium 2946527 Bacteria Bacteria 47.8 0.00106   NR MBA2665161.1 2946527 g52034 i0 31.1 0.96085409252669 90 56 91.8 2 276 19 1869 1956 MBA2665161.1 hypothetical protein [Lujinxingiaceae bacterium] diamond 270 47.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Lujinxingiaceae   Lujinxingiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;