RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1059246", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 3 ✖

bioproject 1

  • PRJNA1059246 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27311917 27311917 PRJNA1059246_P_NODE_40223_length_335_cov_2.030534_g39597_i0 PRJNA1059246 40223 335 2.030534 6.8022889 root 1 Root_unresolved Root_unresolved 45.8 0.00826   NR WP_286475720.1 2584467 g39597 i0 44.8 1.44179104477612 58 30 51.9 1 276 103 111 166 WP_286475720.1 CDC27 family protein [Methanobacterium aridiramus] diamond 483 46.2 0.991341991341991 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium aridiramus
29972212 29972212 PRJNA1059246_P_NODE_45051_length_312_cov_0.966527_g44425_i0 PRJNA1059246 45051 312 0.966527 3.01556424 Methanothermus fervidus DSM 2 2180 Archaea Archaea 58.5 2.28e-7   NR ADP76834.1 523846 g44425 i0 38.7 0.721153846153846 75 45 72.1 1 87 311 4 77 ADP76834.1 AMP-dependent synthetase and ligase [Methanothermus fervidus DSM 2088] diamond 225 58.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanothermaceae Methanothermus Methanothermus fervidus
32848131 32848131 PRJNA1059246_P_NODE_57840_length_264_cov_1.481675_g57214_i0 PRJNA1059246 57840 264 1.481675 3.911622 Methanobacterium arcticum 386456 Archaea Archaea 48.9 2.98e-4   NR WP_052379777.1 386456 g57214 i0 64.5 0.727272727272727 31 11 35.2 0 260 168 214 244 WP_052379777.1 tetratricopeptide repeat protein, partial [Methanobacterium arcticum] diamond 192 48.9 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium arcticum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;