RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA1059246", tax_clade = "Metamonada" and tax_phylum = "Fornicata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Fornicata · 5 ✖

tax_clade 1

  • Metamonada · 5 ✖

bioproject 1

  • PRJNA1059246 · 5 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26972017 26972017 PRJNA1059246_P_NODE_45802_length_308_cov_1.714894_g45176_i0 PRJNA1059246 45802 308 1.714894 5.28187352 Carpediemonas membranifera 201153 Fornicata other_Eukaryota 47 0.00231   NR KAG9392454.1 201153 g45176 i0 29.7 0.983766233766234 101 69 96.4 1 5 301 99 199 KAG9392454.1 hypothetical protein J8273_5446 [Carpediemonas membranifera] diamond 303 47 1 Eukaryota Metamonada   Fornicata       Carpediemonas Carpediemonas membranifera
27098542 27098542 PRJNA1059246_P_NODE_34562_length_368_cov_1.044068_g33936_i0 PRJNA1059246 34562 368 1.044068 3.84217024 Hexamita inflata 28002 Fornicata other_Eukaryota 45.1 0.0196   NR CAK8747303.1 28002 g33936 i0 28 0.96195652173913 118 66 85.6 5 24 338 177 288 CAK8747303.1 HINF_084482 [Hexamita inflata] diamond 354 45.1 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Hexamita Hexamita inflata
27888169 27888169 PRJNA1059246_P_NODE_50665_length_287_cov_1.439252_g50039_i0 PRJNA1059246 50665 287 1.439252 4.13065324 Giardia intestinalis 5741 Fornicata other_Eukaryota 47 0.00207   NR ESU44403.1 5741 g50039 i0 37.5 2.50871080139373 80 43 76.3 2 278 60 214 293 ESU44403.1 Protein kinase NEK family protein [Giardia intestinalis] diamond 720 47 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
28614511 28614511 PRJNA1059246_P_NODE_45527_length_310_cov_0.924051_g44901_i0 PRJNA1059246 45527 310 0.924051 2.8645581 Carpediemonas membranifera 201153 Fornicata other_Eukaryota 58.9 1.7e-7   NR KAG9394637.1 201153 g44901 i0 33.3 0.958064516129032 99 57 93.9 3 291 1 37 128 KAG9394637.1 Tubulin--tyrosine ligase [Carpediemonas membranifera] diamond 297 58.9 1 Eukaryota Metamonada   Fornicata       Carpediemonas Carpediemonas membranifera
29182984 29182984 PRJNA1059246_P_NODE_45209_length_311_cov_1.294118_g44583_i0 PRJNA1059246 45209 311 1.294118 4.02470698 Giardia intestinalis assemblage B 1394984 Fornicata other_Eukaryota 107 9.69e-25   NR KWX13133.1 1394984 g44583 i0 50 0.964630225080386 100 50 96.5 0 301 2 178 277 KWX13133.1 TCP-1 chaperonin subunit theta cpn60 chaperonin family protein [Giardia intestinalis assemblage B] diamond 300 107 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;