RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1059246", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1059246 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27288217 27288217 PRJNA1059246_P_NODE_39363_length_340_cov_1.434457_g38737_i0 PRJNA1059246 39363 340 1.434457 4.8771538 Chitinivibrionales bacterium 2663014 Bacteria Bacteria 45.4 0.0127   NR MBD3420947.1 2663014 g38737 i0 34.4 0.820588235294118 93 53 81.2 2 294 19 377 462 MBD3420947.1 HAMP domain-containing protein [Chitinivibrionales bacterium] diamond 279 45.4 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinivibrionia Chitinivibrionales     Chitinivibrionales bacterium
31330908 31330908 PRJNA1059246_P_NODE_68816_length_244_cov_1.584795_g68190_i0 PRJNA1059246 68816 244 1.584795 3.8668998 Fibrobacteria bacterium 2725311 Bacteria Bacteria 76.3 6.69e-16   NR MCB9497171.1 2725311 g68190 i0 61.4 0.700819672131147 57 21 68.9 1 235 68 42 98 MCB9497171.1 Dabb family protein [Fibrobacteria bacterium] diamond 171 76.3 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       Fibrobacteria bacterium
32753711 32753711 PRJNA1059246_P_NODE_7580_length_887_cov_21.797297_g7080_i0 PRJNA1059246 7580 887 21.797297 193.34202439 Fibrobacterota bacterium 2052160 Bacteria Bacteria 47 0.00578   NR MBK8803445.1 2052160 g7080 i0 30.5 1.17023675310034 82 56 27.7 1 70 315 7 87 MBK8803445.1 hypothetical protein [Fibrobacterota bacterium] diamond 1038 47 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;