RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1059246", tax_clade = "CRuMs" and tax_superkingdom = "Eukaryota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Eukaryota · 2 ✖

tax_clade 1

  • CRuMs · 2 ✖

bioproject 1

  • PRJNA1059246 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16754082 16754082 PRJNA1059246_P_NODE_45274_length_311_cov_0.970588_g44648_i0 PRJNA1059246 45274 311 0.970588 3.01852868 Mantamonas sp. Dar es Salaam 1238683 Root_unresolved Root_unresolved 265 3.4299999999999996e-66   NTclustered gi|300078495|gb|GU001157.1| 1238683 g44648 i0 95.732 52.2186495176849 164 7 53 0 148 311 2463 2626 Mantomonas sp. Dar es Salaam 28S ribosomal RNA gene, partial sequence blastn 16240 265 1 Eukaryota CRuMs         Mantamonadidae Mantamonas Mantamonas sp. Dar es Salaam
25237690 25237690 PRJNA1059246_P_NODE_27040_length_426_cov_1.671388_g26415_i0 PRJNA1059246 27040 426 1.671388 7.12011288 Collodictyon 190324 Root_unresolved Root_unresolved 56.5 0.003   NTclustered gi|1200177725|gb|MF039359.1| 190325 g26415 i0 85.455 1.68779342723005 55 7 13 1 1 55 2324 2271 Collodictyon triciliatum isolate C_KIVT04 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 719 56.5 1 Eukaryota CRuMs         Collodictyonidae Collodictyon Collodictyon triciliatum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;