RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1057075" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 4 ✖

bioproject 1

  • PRJNA1057075 · 4 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26971949 26971949 PRJNA1057075_S_NODE_7322_length_175_cov_1.222222_g7223_i0 PRJNA1057075 7322 175 1.222222 2.1388885 archaeon 1906665 Archaea Archaea 68.9 2.16e-12   NR RYH25290.1 1906665 g7223 i0 85.3 0.582857142857143 34 5 58.3 0 171 70 173 206 RYH25290.1 MAG: 50S ribosomal protein L16 [archaeon] diamond 102 68.9 1 Archaea               archaeon
29277284 29277284 PRJNA1057075_S_NODE_6869_length_179_cov_1.161538_g6770_i0 PRJNA1057075 6869 179 1.161538 2.07915302 archaeon 1906665 Archaea Archaea 45.8 3.63e-4   NR RYY73917.1 1906665 g6770 i0 78.6 0.46927374301676 28 6 46.9 0 155 72 91 118 RYY73917.1 MAG: 50S ribosomal protein P1 [archaeon] diamond 84 45.8 1 Archaea               archaeon
30383316 30383316 PRJNA1057075_S_NODE_2373_length_269_cov_1.400000_g2274_i0 PRJNA1057075 2373 269 1.4 3.766 archaeon 1906665 Archaea Archaea 92.4 2.8000000000000004e-22   NR RYH28873.1 1906665 g2274 i0 73.7 1.27137546468401 57 15 63.6 0 7 177 32 88 RYH28873.1 MAG: hypothetical protein EON65_10550 [archaeon] diamond 342 92.4 1 Archaea               archaeon
31425744 31425744 PRJNA1057075_S_NODE_6096_length_187_cov_2.884058_g5997_i0 PRJNA1057075 6096 187 2.884058 5.39318846 archaeon 1906665 Archaea Archaea 54.7 9.88e-7   NR RYH13701.1 1906665 g5997 i0 55.4 0.898395721925134 56 25 89.8 0 6 173 240 295 RYH13701.1 MAG: 50S ribosomal protein L4 [archaeon] diamond 168 54.7 1 Archaea               archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;